PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA11G0125700.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 277aa    MW: 30246.1 Da    PI: 6.5818
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA11G0125700.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM96.15.2e-30191419128
                NAM   9 PtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..... 95 
                        Pt+ +lvv+yL++++ ++++++ +  ++vdi++++Pwd+   ++++++  yfF++++++   ++++nra+ +g+W+  g++ ++++k     
  ORGLA11G0125700.1  19 PTNADLVVHYLHRRAIQEPVPC-DLSTNVDILQHNPWDIV-PAEEKTNGKYFFIHEENERLGNHHSNRAAGDGFWRPAGSEVPIYHKrsgga 108
                        9********************9.899*************5.455677899**********99************************988777 PP

                NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +++lvg+k+tLvf+ g+++++++t+Wvm+e+rl
  ORGLA11G0125700.1 109 DEALVGMKRTLVFHYGNSSSAKRTEWVMQEFRL 141
                        7777***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100528.04111207IPR003441NAC domain
SuperFamilySSF1019416.54E-2918146IPR003441NAC domain
PfamPF023652.2E-1519141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MASPGVCINL VNGTSTRLPT NADLVVHYLH RRAIQEPVPC DLSTNVDILQ HNPWDIVPAE  60
EKTNGKYFFI HEENERLGNH HSNRAAGDGF WRPAGSEVPI YHKRSGGADE ALVGMKRTLV  120
FHYGNSSSAK RTEWVMQEFR LAGATLIPCP VTRPATGDGS MLPCHRTGTT IATENNGSPS  180
AGQTHGPLEK TMVEPDSSLR ICRIYKKRQR TPQFIIPPSI GDARELILAL PTIGNTREVA  240
LALPAIDFLG QPSFEEGSDV SADVITDDKD GYGHGMN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-161914123140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA11G0125700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2420100.0AK242010.1 Oryza sativa Japonica Group cDNA, clone: J075106F03, full insert sequence.
GenBankEU8470010.0EU847001.1 Oryza sativa Japonica Group clone KCS322B05 NAM protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616648.10.0NAC transcription factor NAM-1
TrEMBLI1R0G50.0I1R0G5_ORYGL; Uncharacterized protein
STRINGORGLA11G0125700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44822369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39820.13e-23NAC domain containing protein 94