PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA11G0120100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 71aa MW: 7848.87 Da PI: 4.1776 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.4 | 4.4e-10 | 33 | 71 | 3 | 43 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksr 43 +WT +E +ll++a + l + W Ia+++ ++t qc ++ ORGLA11G0120100.1 33 SWTDQETLLLLEALEILQAK-WGDIAEHVA-TKTKAQCMLH 71 7*******************.*********.*******998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 16.141 | 29 | 71 | IPR017884 | SANT domain |
SuperFamily | SSF46689 | 1.72E-9 | 29 | 71 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.2E-7 | 32 | 71 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.5E-9 | 33 | 71 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 71 aa Download sequence Send to blast |
LHDYDKGNLD AGMSQTDFII MESAEIPGFG GTSWTDQETL LLLEALEILQ AKWGDIAEHV 60 ATKTKAQCML H |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of a multiprotein complex equivalent of the SWI/SNF complex, an ATP-dependent chromatin-remodeling complex, which is required for the positive and negative regulation of gene expression of a large number of genes. It changes chromatin structure by altering DNA-histone contacts within a nucleosome, leading eventually to a change in nucleosome position, thus facilitating or repressing binding of gene-specific transcription factors. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA11G0120100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL442118 | 1e-108 | AL442118.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0201G08, complete sequence. | |||
GenBank | CP012612 | 1e-108 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633469.1 | 6e-32 | SWI/SNF complex subunit SWI3D isoform X1 | ||||
Refseq | XP_015633471.1 | 5e-32 | SWI/SNF complex subunit SWI3D isoform X2 | ||||
Swissprot | Q8VY05 | 2e-13 | SWI3D_ARATH; SWI/SNF complex subunit SWI3D | ||||
TrEMBL | I1R0A9 | 9e-45 | I1R0A9_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA11G0120100.1 | 1e-45 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP21939 | 4 | 4 |