PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA11G0104000.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 461aa    MW: 46966.9 Da    PI: 5.9733
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA11G0104000.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.00026127149123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        + C +C k F ++     H+r H
  ORGLA11G0104000.1 127 FACRICRKEFDTRKAVDGHMRIH 149
                        78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139120.093126151IPR007087Zinc finger, C2H2
SuperFamilySSF576671.94E-6126149No hitNo description
PROSITE profilePS5015710.284127154IPR007087Zinc finger, C2H2
SMARTSM003550.011127149IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280129149IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.9E-4231245IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.39232261IPR007087Zinc finger, C2H2
SMARTSM003550.75232256IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280234256IPR007087Zinc finger, C2H2
SuperFamilySSF576671.94E-6284311No hitNo description
PROSITE profilePS501578.954289316IPR007087Zinc finger, C2H2
PfamPF139120.0017289312IPR007087Zinc finger, C2H2
SMARTSM003556.3289311IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280291311IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MEGGNSSKGA MEGGHRCRRP NVDDDDQIEE GEICYDCHVS GSETDDDDEH HRRAVLPPHH  60
RRAVLPPRDN GDGCAEHKRC RLDNAATAPA PSAGSVLTTS NGSAIVAIAS AAAAAAAAVS  120
TMAREVFACR ICRKEFDTRK AVDGHMRIHR QQSIATPKYN AADNSRVTVV AEPRTDLDLS  180
GPHGSSSAPP SPPAPPANPP NHNQAVGHQP AAAAPNAGVV VVEGAPQKSL PYMCKMQGCG  240
RAFPTHQGLG GHAAGHQNRS KAAAAAASEQ GSSGTGADGC HGGADSSKHR CRECGMEWKT  300
GFALGGHMRK HQTKEKVTVN EKEPNVAGKH ISLGPPPSPD LTPAAVEVTS SEPLDQPPLL  360
SMVVGAEVAA PALLALANEA AALPPQDDQA EEEAAAEAAA PAEAAALPPV EAGAEAVDVG  420
AAPEAPLPAP IAGMGTVRIF GFLVEKPAPG DGSGGXGSAP A
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA11G0104000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1453670.0AC145367.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0064J09 map near 50283S, complete sequence.
GenBankAK1109140.0AK110914.1 Oryza sativa Japonica Group cDNA clone:002-173-C05, full insert sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616778.10.0myristoylated alanine-rich C-kinase substrate
TrEMBLI1QZU80.0I1QZU8_ORYGL; Uncharacterized protein
STRINGORGLA11G0104000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP171081012