PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA11G0090500.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 580aa    MW: 62305.6 Da    PI: 6.2934
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA11G0090500.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.26.3e-11165221155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV+ ++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  ORGLA11G0090500.1 165 SIYRGVTKHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 221
                        57*******************4444.2455535555.779999**************98 PP
2AP251.13.2e-16264315155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV+++++ grW A+I  +     +k  +lg+fgt eeAa+a++ a+ k++g
  ORGLA11G0090500.1 264 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 315
                        57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.5E-14165231IPR016177DNA-binding domain
PfamPF008472.8E-8165221IPR001471AP2/ERF domain
CDDcd000181.18E-18165231No hitNo description
Gene3DG3DSA:3.30.730.101.9E-11166230IPR001471AP2/ERF domain
PROSITE profilePS5103217.122166229IPR001471AP2/ERF domain
SMARTSM003805.7E-23166235IPR001471AP2/ERF domain
PRINTSPR003672.8E-6167178IPR001471AP2/ERF domain
PfamPF008474.1E-11264315IPR001471AP2/ERF domain
CDDcd000182.80E-24264325No hitNo description
SuperFamilySSF541711.05E-17264325IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-17265324IPR001471AP2/ERF domain
PROSITE profilePS5103218.834265323IPR001471AP2/ERF domain
SMARTSM003806.0E-33265329IPR001471AP2/ERF domain
PRINTSPR003672.8E-6305325IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MASITNWLGF SSSSFSGAGA DPVLPHPPLQ EWGSAYEGGG TVAAAGGEET AAPKLEDFLG  60
MQVQQETAAA AAGHGRGGSS SVVGLSMIKN WLRSQPPPAV VGGEDAMMAL AVSTSASPPV  120
DATAPACISP DGMGSKAADG GGAAEAAAAA QRMKAAMDTF GQRTSIYRGV TKHRWTGRYE  180
AHLWDNSCRR EGQTRKGRQG GYDKEEKAAR AYDLAALKYW GTTTTTNFPV SNYEKELDEM  240
KHMNRQEFVA SLRRKSSGFS RGASIYRGVT RHHQHGRWQA RIGRVAGNKD LYLGTFGTQE  300
EAAEAYDIAA IKFRGLNAVT NFDMSRYDVK SIIESSNLPI GTGTTRRLKD SSDHTDNVMD  360
INVNTEPNNV VSSHFTNGVG NYGSQHYGYN GWSPISMQPI PSQYANGQPR AWLKQEQDSS  420
VVTAAQNLHN LHHFSSLGYT HNFFQQSDVP DVTGFVDAPS RSSDSYSFRY NGTNGFHGLP  480
GGISYAMPVA TAVDQGQGIH GYGEDGVAGI DTTHNLYGSR NVYYLSEGSL VADVEKEGDY  540
GQSVGGNSWV LPTPESEMVE KADNVTVCHG MPLFSVWNDA
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA11G0090500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2876210.0AK287621.1 Oryza sativa Japonica Group cDNA, clone: J065066I09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025876947.10.0AP2-like ethylene-responsive transcription factor BBM1
SwissprotQ8LSN21e-125BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLI1PHT90.0I1PHT9_ORYGL; Uncharacterized protein
STRINGORGLA03G0393500.10.0(Oryza glaberrima)
STRINGORGLA11G0090500.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-116AP2 family protein