PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA11G0080000.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Nin-like
Protein Properties Length: 881aa    MW: 97606.5 Da    PI: 6.6829
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA11G0080000.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK92.72.7e-29532582252
             RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                        ek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++
  ORGLA11G0080000.1 532 EKSVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKIKKV 582
                        799**********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.348521602IPR003035RWP-RK domain
PfamPF020423.9E-26535582IPR003035RWP-RK domain
SuperFamilySSF542778.83E-24774869No hitNo description
Gene3DG3DSA:3.10.20.2401.0E-24780862No hitNo description
PfamPF005649.1E-19783864IPR000270PB1 domain
PROSITE profilePS5174526.975783865IPR000270PB1 domain
SMARTSM006666.6E-26783865IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 881 aa     Download sequence    Send to blast
MDMLMLSSAL DGLDSYTDLV AGSSVADSIF SALTCFPPSQ ERLLHVSTPV GSNSRQDDSD  60
VSITKEGTTT RRGDCAAGLA SGELVAAGIG SVPKPFDGVT LTERMLRALA MLKEASGGEA  120
ILVQVWMPVR NGEQHVLTTS DQPFLLDQKL TGYREVSRQF TFSAEEGPGL FPGLPGRVFM  180
SGMPEWTSNV MYYHGSEYLR VDYARRHEVR GSLAMPVFNS SGGSCCAVLE VVMTREKDNF  240
CLEMVNVSNA LQSVQLSTVN AWRHSQSYSR DQKLALMEIF DVLQAVCQAH LLPLALAWIP  300
VCSKRDVLVS VEYGANFGKR NKEVLCIEES ACYVNNTRMR DFVQVCAEHP LEKGQGVAGN  360
AYLSNNPFFS SDVKDYDMHA YPLVNHARKF GLHAAVAIRL RSTYTKNDDY VLEFFLPVLC  420
KGGGEQQLLL DSISATMRRV CKSLRTVSDA ELKEDVTRKP SNENRSGTRC PSPVNLIYSG  480
REIDVSNETK TNTPLEYQIE GIDEQLSDTK STNKLIKCSN ASDGEKRRSS TEKSVSLSVL  540
QQYFSGSLKD AAKSIGVCPT TLKRICRQHG ISRWPSRKIK KVNRSLKKIQ NVISSVHGVE  600
GVLKYDPSTG CLVSSVSPSI EPVLMNVEHK GSDPLPIESE LPHLNFEPDC DAYRREHAGQ  660
DVLHKLQNKQ NGEINFDMDD GELFRNSHST RTLSGAFCED MPNGLYVARE MTGTRTERLE  720
HKPSSRDSFS APQEYRMESE TDKSNKNSKQ SLPSSSSMTD CSTSSGETFK SIKSQSANES  780
NKTVVVKASY KNDTIRFKLL PSMKYEQLLE EIAKRLKLSV GLFQLKYKDD EGDWVILASD  840
ADLQECLEIL DTTRLRILKL QVQDVVCPIG SSSGSCSMLR P
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA11G0080000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0648590.0AK064859.1 Oryza sativa Japonica Group cDNA clone:J013000H14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616880.10.0protein NLP2-like isoform X1
RefseqXP_015616881.10.0protein NLP2-like isoform X1
TrEMBLI1QZ580.0I1QZ58_ORYGL; Uncharacterized protein
STRINGORGLA11G0080000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36703573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59580.21e-179Nin-like family protein