PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA11G0080000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Nin-like | ||||||||
Protein Properties | Length: 881aa MW: 97606.5 Da PI: 6.6829 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 92.7 | 2.7e-29 | 532 | 582 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ ORGLA11G0080000.1 532 EKSVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKIKKV 582 799**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.348 | 521 | 602 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 3.9E-26 | 535 | 582 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 8.83E-24 | 774 | 869 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 1.0E-24 | 780 | 862 | No hit | No description |
Pfam | PF00564 | 9.1E-19 | 783 | 864 | IPR000270 | PB1 domain |
PROSITE profile | PS51745 | 26.975 | 783 | 865 | IPR000270 | PB1 domain |
SMART | SM00666 | 6.6E-26 | 783 | 865 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 881 aa Download sequence Send to blast |
MDMLMLSSAL DGLDSYTDLV AGSSVADSIF SALTCFPPSQ ERLLHVSTPV GSNSRQDDSD 60 VSITKEGTTT RRGDCAAGLA SGELVAAGIG SVPKPFDGVT LTERMLRALA MLKEASGGEA 120 ILVQVWMPVR NGEQHVLTTS DQPFLLDQKL TGYREVSRQF TFSAEEGPGL FPGLPGRVFM 180 SGMPEWTSNV MYYHGSEYLR VDYARRHEVR GSLAMPVFNS SGGSCCAVLE VVMTREKDNF 240 CLEMVNVSNA LQSVQLSTVN AWRHSQSYSR DQKLALMEIF DVLQAVCQAH LLPLALAWIP 300 VCSKRDVLVS VEYGANFGKR NKEVLCIEES ACYVNNTRMR DFVQVCAEHP LEKGQGVAGN 360 AYLSNNPFFS SDVKDYDMHA YPLVNHARKF GLHAAVAIRL RSTYTKNDDY VLEFFLPVLC 420 KGGGEQQLLL DSISATMRRV CKSLRTVSDA ELKEDVTRKP SNENRSGTRC PSPVNLIYSG 480 REIDVSNETK TNTPLEYQIE GIDEQLSDTK STNKLIKCSN ASDGEKRRSS TEKSVSLSVL 540 QQYFSGSLKD AAKSIGVCPT TLKRICRQHG ISRWPSRKIK KVNRSLKKIQ NVISSVHGVE 600 GVLKYDPSTG CLVSSVSPSI EPVLMNVEHK GSDPLPIESE LPHLNFEPDC DAYRREHAGQ 660 DVLHKLQNKQ NGEINFDMDD GELFRNSHST RTLSGAFCED MPNGLYVARE MTGTRTERLE 720 HKPSSRDSFS APQEYRMESE TDKSNKNSKQ SLPSSSSMTD CSTSSGETFK SIKSQSANES 780 NKTVVVKASY KNDTIRFKLL PSMKYEQLLE EIAKRLKLSV GLFQLKYKDD EGDWVILASD 840 ADLQECLEIL DTTRLRILKL QVQDVVCPIG SSSGSCSMLR P |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA11G0080000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK064859 | 0.0 | AK064859.1 Oryza sativa Japonica Group cDNA clone:J013000H14, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015616880.1 | 0.0 | protein NLP2-like isoform X1 | ||||
Refseq | XP_015616881.1 | 0.0 | protein NLP2-like isoform X1 | ||||
TrEMBL | I1QZ58 | 0.0 | I1QZ58_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA11G0080000.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3670 | 35 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59580.2 | 1e-179 | Nin-like family protein |