PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA11G0070600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ZF-HD | ||||||||
Protein Properties | Length: 382aa MW: 40123.6 Da PI: 7.3293 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 102.7 | 2.5e-32 | 141 | 195 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 +v+Y+eClkNhAa++Gg+a+DGCgEfmps geeg+ +alkC+ACgCHRnFHR+e + ORGLA11G0070600.1 141 AVKYRECLKNHAAAIGGNATDGCGEFMPS-GEEGSLEALKCSACGCHRNFHRKEAD 195 689*************************9.999********************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 3.4E-29 | 142 | 194 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.5E-30 | 143 | 193 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.735 | 144 | 193 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 1.0E-24 | 144 | 195 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 8.96E-14 | 289 | 351 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.1E-23 | 291 | 351 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.7E-21 | 302 | 351 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MVSILQLQTR TEASPASSAS AAATRIFAVR RQQQEQEGEE EEEFEFQERM DLSGAQGELP 60 IPMHASAAAS PFAGMGAHGG AGGGHVVELH RHEHVGNNGQ AMAMASPPPT NVAVAAEQEG 120 SPVAGKKRGG MAVVGGGGGV AVKYRECLKN HAAAIGGNAT DGCGEFMPSG EEGSLEALKC 180 SACGCHRNFH RKEADDLDAD SCAAALRAAA GRHHHLLGPA LPHHHHKNGG GLLVAGGDPY 240 GAAYAAAXXX XXXPPPPPHG HHHHHQIIMP LNMIHTSESD EMDVSGGGGG GGRGGGSSSS 300 SKKRFRTKFT AEQKARMLEF AERVGWRLQK LDDAMVHHFC QEIGVKRRVL KHAVGDVTVA 360 FMSDHLTSKI KGVKTEEIKK GV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 3e-17 | 301 | 351 | 16 | 66 | ZF-HD homeobox family protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 284 | 296 | SGGGGGGGRGGGS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA11G0070600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012619 | 0.0 | CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025876888.1 | 1e-158 | zinc-finger homeodomain protein 4 | ||||
Swissprot | Q53N87 | 1e-160 | ZHD4_ORYSJ; Zinc-finger homeodomain protein 4 | ||||
TrEMBL | I1QYW4 | 0.0 | I1QYW4_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA11G0070600.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP815 | 35 | 145 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14440.2 | 4e-27 | homeobox protein 31 |