PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA11G0056700.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 267aa    MW: 28801 Da    PI: 10.4098
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA11G0056700.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.52.6e-172671147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                       rg W + Ede+l ++v+++G+ +W++Ia+++  gR++k+c++rw++ 
  ORGLA11G0056700.1 26 RGHWRPGEDEKLRQLVEKYGPQNWNSIAEKLE-GRSGKSCRLRWFNQ 71
                       899*****************************.***********996 PP
2Myb_DNA-binding62.58.7e-2079122247
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         ++T+eE+e+l+ a++ +G++ W++Iar+++ gRt++ +k++w+ +
  ORGLA11G0056700.1  79 RPFTEEEEERLLAAHRHHGNK-WALIARHFP-GRTDNAVKNHWHVV 122
                        69*******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.6622172IPR017930Myb domain
SMARTSM007172.1E-142574IPR001005SANT/Myb domain
SuperFamilySSF466893.67E-3025119IPR009057Homeodomain-like
PfamPF002498.0E-172671IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-272779IPR009057Homeodomain-like
CDDcd001671.47E-142970No hitNo description
PROSITE profilePS5129428.91873127IPR017930Myb domain
SMARTSM007171.3E-1677125IPR001005SANT/Myb domain
PfamPF002497.8E-1778121IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-2280122IPR009057Homeodomain-like
CDDcd001678.26E-989120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MASSSTTNTS DGAGKPASSS SSACPRGHWR PGEDEKLRQL VEKYGPQNWN SIAEKLEGRS  60
GKSCRLRWFN QLDPRINKRP FTEEEEERLL AAHRHHGNKW ALIARHFPGR TDNAVKNHWH  120
VVRARRSRER SRLLARAAAA AAHPPPFSSY ASQLDFSGGG ASSGARNSSL CFGFGMINRS  180
SSSSSSPAAA PFLIKSFNGA SYGTLLPATT SMAAAAQPVS TITFSSTPMR ETLELMDAGG  240
HENHGDVDGG GDKRKGVLYF DFLGVGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-3026119497C-Myb DNA-Binding Domain
1msf_C3e-3026119497C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA11G0056700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1235230.0AC123523.2 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0051P13, complete sequence.
GenBankAF1722820.0AF172282.1 Oryza sativa adh1-adh2 region.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615875.10.0transcription factor CSA-like
TrEMBLI1QYH50.0I1QYH5_ORYGL; Uncharacterized protein
STRINGORGLA11G0056700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.12e-49myb domain protein 52