PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA11G0046500.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 267aa    MW: 28489.6 Da    PI: 8.1365
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA11G0046500.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM61.23.3e-19551893128
                NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya.tgkrk.nratk..sgyWk.atgkd 89 
                        p f+F+Ptd ++v  yL +++   + ++  vi++ d+ ++ePw+L +++ +  +   fF++ +++    g+rk +ra+k   g+W+ ++g+ 
  ORGLA11G0046500.1  55 PAFKFDPTDADIVASYLLPRALYGRGHA-AVIQD-DVSRCEPWTLMREHGHAASAHAFFVHDHESVGgGGRRKvQRAVKngGGVWRiQKGEV 144
                        78******************99999777.55655.**********855444444445666655555514444425665545789*9555654 PP

                NAM  90 kevlsk........kgel..vglkktLvfykgrapkgektdWvmheyrl 128
                         +++          +  l  v  ++ L f+  r+ +++++ Wvmhey++
  ORGLA11G0046500.1 145 ATLTIVrdggggggE--LdvVYKRRNLSFH--RRGESSSSGWVMHEYEI 189
                        444433457665433..1559999******..5555679********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-2443204IPR003441NAC domain
PROSITE profilePS5100522.33353205IPR003441NAC domain
PfamPF023653.8E-1455189IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MASTSRKRSA RSLQEDDQTS SAAEAPAAVR EDEERVAVAG MEAWRFGFSR FSGFPAFKFD  60
PTDADIVASY LLPRALYGRG HAAVIQDDVS RCEPWTLMRE HGHAASAHAF FVHDHESVGG  120
GGRRKVQRAV KNGGGVWRIQ KGEVATLTIV RDGGGGGGEL DVVYKRRNLS FHRRGESSSS  180
GWVMHEYEIT SPPLPATVLS RIRATPRAKD KKLCIKEEPS CSTSAAGDGD GERSGPNPDH  240
IAAGAGDSAT ANHNNTTSAA TTMAAAV
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA11G0046500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616128.11e-167NAC domain-containing protein 89
TrEMBLI1QY730.0I1QY73_ORYGL; Uncharacterized protein
STRINGORGLA11G0046500.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143011926
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.16e-10Arabidopsis NAC domain containing protein 87