PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA11G0035300.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 676aa    MW: 69776.6 Da    PI: 6.6422
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA11G0035300.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.92e-093794161954
                        HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  ORGLA11G0035300.1 379 FEHflHPYPKDSDKIMLAKQTGLTRSQVSNWFINARVR 416
                        664459******************************88 PP
2BELL118.33.6e-38240311172
               BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                        erqelq+kk kL+++l+eV++rY+qy++q+q+v++sFeavag gsa+ Yt+lAl++iSr+FrcL+daia+q+
  ORGLA11G0035300.1 240 ERQELQMKKGKLINMLDEVEQRYRQYHQQMQVVVASFEAVAGGGSARTYTALALRTISRQFRCLRDAIAGQV 311
                        79*******************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.1E-61158309IPR006563POX domain
PfamPF075264.1E-50166308IPR006563POX domain
PROSITE profilePS5007112.228357420IPR001356Homeobox domain
SMARTSM003891.2E-9360424IPR001356Homeobox domain
CDDcd000863.71E-13360421No hitNo description
SuperFamilySSF466893.55E-17361427IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.9E-29363426IPR009057Homeodomain-like
PfamPF059202.6E-18377416IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009610Biological Processresponse to symbiotic fungus
GO:0009737Biological Processresponse to abscisic acid
GO:0010197Biological Processpolar nucleus fusion
GO:0010201Biological Processresponse to continuous far red light stimulus by the high-irradiance response system
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MAAYYHGGAG TDIQSGTDGL QTLYLMNPSY AGYGDAAAAP GAAANMMLLN SAVTSMTPVS  60
FGHQPSPSSS SAAQHFVGIP LQAPPASGYN LWTPAAATGA GDMSPPTPQH QHQKAHGGGA  120
AGVSAVLSLS SREAAPPVTV AAVVAAGDEG KYLQAVAQGA ASQGQMVMSS KYLKAAQELL  180
DEVVSVSKGV DDVKAAAAAK SPASVKKKED SEGVSGGGTE DGGGAKSGGA PPPPEMSTAE  240
RQELQMKKGK LINMLDEVEQ RYRQYHQQMQ VVVASFEAVA GGGSARTYTA LALRTISRQF  300
RCLRDAIAGQ VRAASRALGE AVDADGGCGR TVGSRLRYID HQLRQQRALQ QLGMMQSSAW  360
RPQRGLPERS VSILRAWLFE HFLHPYPKDS DKIMLAKQTG LTRSQVSNWF INARVRLWKP  420
MVEEMYLEET KDQDGGGGGA GDEGSKPGGS KGGGAGVNGG VVDSAAKMDS KAAHMESGGG  480
VHPSLLELAG DHQAQAGFYD DDDEEDGGAA AALQQKLKKA RTEEQQQAAF HVSDVATLHA  540
HAAAAAAARH DEVSHRELLM KFMESGSAGA GAAARDHHHE HHGGVGYSLF APAPYGQFAT  600
EQFAFAGHGG GGGGGGVSLT LGLPHGAEQT ASFLMTSSNG SDGAGHVAGG GGGGGYDMNM  660
QSTKSFAAQL MRDFVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A3e-17366424563Homeobox protein Meis2
4xrm_B3e-17366424563Homeobox protein Meis2
5bng_A2e-17366424159Homeobox protein Meis2
5bng_B2e-17366424159Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA11G0035300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1332170.0AC133217.2 Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0052H02, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616922.10.0BEL1-like homeodomain protein 1
RefseqXP_015616923.10.0BEL1-like homeodomain protein 1
RefseqXP_015616924.10.0BEL1-like homeodomain protein 1
RefseqXP_015616925.10.0BEL1-like homeodomain protein 1
SwissprotQ9SJ561e-113BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLI1QXW10.0I1QXW1_ORYGL; Uncharacterized protein
STRINGORGLA11G0035300.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48163758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.32e-89BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]