PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA11G0035200.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 425aa    MW: 46815.1 Da    PI: 5.4979
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA11G0035200.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.40.000292302671355
                        HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        R+ i +++ eLre++P+ a      K s  + Lek+v+++  Lq
  ORGLA11G0035200.1 230 RQLIQDRIKELREMVPNgA------KCSIDALLEKTVKHMLFLQ 267
                        67799************66......999999********99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.493217266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.98E-5230272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-4230279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010078Biological Processmaintenance of root meristem identity
GO:0010089Biological Processxylem development
GO:0010479Biological Processstele development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MNNMDGCKPP GLSLERTSPL FMEQSVENDL FDILGPQFHH LCHNAGADLV HWTDAKPESS  60
DRDVPESSIH ADSAPLFSSR DNELYSGIFS LTDTDQLLDA VISNVNPAGK QSSDDSASCK  120
TSLTDIPATS YLCSKEMKQC GSSGVPSVLI KNEFAQFIKQ PCLAENAEDG CLSQNNGMHK  180
SQIRLWIESG QSMKCESASA SNSKGLDTPS KANRKRSRPG ESPKPRPKDR QLIQDRIKEL  240
REMVPNGAKC SIDALLEKTV KHMLFLQSVT KHADKLKDST ESKILGSENG PVWKDYFEGG  300
ATWAFDVGSQ SMTCPIIVED LDRPRQMLVE MICEDRGIFL EIADFIKGLG LTILRGAMEA  360
RKSKIWARFT VEANRDVTRM EIFLSLVRLL EPNCDSSGAA ENANNVNMPL GLVHQPVIPA  420
TGRIQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA11G0035200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1065790.0AK106579.1 Oryza sativa Japonica Group cDNA clone:002-111-C10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616921.10.0transcription factor LHW isoform X1
TrEMBLA0A0D3HIH00.0A0A0D3HIH0_9ORYZ; Uncharacterized protein
STRINGOBART11G03790.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26543242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.17e-58conserved peptide upstream open reading frame 7