PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA11G0033600.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 278aa    MW: 30843.1 Da    PI: 7.0038
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA11G0033600.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B390.41.4e-2838129187
                        EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                        f+k ltpsdv+k++rlv+pk++ae++     g    ++  l++ede g  W+++++y+ +s++yvltkGW+++vk+++L++gD+v F++++ 
  ORGLA11G0033600.1  38 FEKPLTPSDVGKLNRLVIPKQHAERYfplgaGDAADKGLILSFEDEAGAPWRFRYSYWTSSQSYVLTKGWSRYVKEKRLDAGDVVHFERVRG 129
                        99****************************9666678899************************************************7642 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.7E-4132154IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.63E-3035130IPR015300DNA-binding pseudobarrel domain
CDDcd100172.01E-2737131No hitNo description
SMARTSM010191.3E-2138144IPR003340B3 DNA binding domain
PROSITE profilePS5086312.77438144IPR003340B3 DNA binding domain
PfamPF023625.1E-2638129IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MAMNHPLFSQ EQPQSWPWGV AMYANFHYHH HYEKEHMFEK PLTPSDVGKL NRLVIPKQHA  60
ERYFPLGAGD AADKGLILSF EDEAGAPWRF RYSYWTSSQS YVLTKGWSRY VKEKRLDAGD  120
VVHFERVRGS FGVGDRLFIG CRRRGDTAAA QTPAPPPAVR VAPAAQNAGE QQPWSPMCYS  180
TSGGGSYPTS PANSYAYRAA DHDHGDMHHA DESPRDTDSP SFSAGSAPSR RLRLFGVNLD  240
CGPEPEADTT AAATMYGYMH QQSSYAAMSA VPSYWGNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A4e-50331443113B3 domain-containing transcription factor NGA1
5os9_B4e-50331443113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA11G0033600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0704870.0AK070487.1 Oryza sativa Japonica Group cDNA clone:J023049E11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615108.10.0B3 domain-containing protein Os11g0156000
SwissprotQ53QI00.0Y1160_ORYSJ; B3 domain-containing protein Os11g0156000
TrEMBLI1QXU40.0I1QXU4_ORYGL; Uncharacterized protein
STRINGORGLA11G0033600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24463889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.21e-53B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]