PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA11G0031300.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 449aa MW: 49351.2 Da PI: 6.6427

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA11G0031300.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	37	7.5e-12	144	172	5	33
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee 33 k rr+++NReAAr+sR+RKka+i++Le ORGLA11G0031300.1 144 KTMRRLAQNREAARKSRLRKKAYIQQLES 172 6679***********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.5E-7	142	180	No hit	No description
PROSITE profile	PS50217	8.887	142	186	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.14E-7	144	177	No hit	No description
Pfam	PF00170	6.1E-9	144	173	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	147	162	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.9E-29	223	297	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence Send to blast
EQQGGANYFG ELEEALMQQV ATLRRTQQTA TTTSTLHHGD TTPFSTTATA AATARPPPTL 60 DIFPSWPMRS LHTPKEGSNV TADTTDSESS SKNNSNQNAS SDQHVLVGDM AGQFDQIPQQ 120 EQHKKMATNS PTHSSKTGKA LDPKTMRRLA QNREAARKSR LRKKAYIQQL ESSKLKLAQM 180 EQDIHRARSQ GLLLGAPGGN TSSGAAMFDV DYARWLEEDS RRMAELHGGL HAHLPDSDLR 240 AIVDDTLTHY DHLFNLKGMA AKADVFHLIT GMWATPAERC FLWMGGFRPS ELLKTLTPQL 300 DPLTEQQVVG ICNLQQSSQQ AEEALSQGLD QLHQSLAETV AGGSPLDDPN VGSFMGHMAI 360 ALGQLSNLEG FVIQQADNLR QQTIHQMHRI LTVRQAARCF LAIGEYHNRL RALSSLWASR 420 PREILVADEG NCGELSIAAH PSESQYSAF

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence Send to blast

EQQGGANYFG ELEEALMQQV ATLRRTQQTA TTTSTLHHGD TTPFSTTATA AATARPPPTL  60
DIFPSWPMRS LHTPKEGSNV TADTTDSESS SKNNSNQNAS SDQHVLVGDM AGQFDQIPQQ  120
EQHKKMATNS PTHSSKTGKA LDPKTMRRLA QNREAARKSR LRKKAYIQQL ESSKLKLAQM  180
EQDIHRARSQ GLLLGAPGGN TSSGAAMFDV DYARWLEEDS RRMAELHGGL HAHLPDSDLR  240
AIVDDTLTHY DHLFNLKGMA AKADVFHLIT GMWATPAERC FLWMGGFRPS ELLKTLTPQL  300
DPLTEQQVVG ICNLQQSSQQ AEEALSQGLD QLHQSLAETV AGGSPLDDPN VGSFMGHMAI  360
ALGQLSNLEG FVIQQADNLR QQTIHQMHRI LTVRQAARCF LAIGEYHNRL RALSSLWASR  420
PREILVADEG NCGELSIAAH PSESQYSAF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA11G0031300.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK069411	0.0	AK069411.1 Oryza sativa Japonica Group cDNA clone:J023013G15, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015617800.1	0.0	transcription factor TGAL4 isoform X1
Swissprot	Q53Q70	0.0	TGAL4_ORYSJ; Transcription factor TGAL4
TrEMBL	I1QXS1	0.0	I1QXS1_ORYGL; Uncharacterized protein
STRING	ORGLA11G0031300.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4444	36	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	1e-135	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709] Miyamoto K, et al. Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells. J. Plant Physiol., 2015. 173: p. 19-27 [PMID:25462074]