PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA11G0021800.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GRAS

Protein Properties

Length: 543aa MW: 59357.7 Da PI: 4.658

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA11G0021800.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	124.2	1.5e-38	193	340	1	148
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 l+elL++cA+av+sg+ + a +lL++++ ++sp+gd+++Rla+yf+ +L+arla+ +l l +s++++ + e l a+++f ++ + ORGLA11G0021800.1 193 LRELLMSCAQAVASGNRRSAGELLEQIKRHSSPTGDATERLAHYFADGLEARLAG-AASLECRLVASAEERASAMELLEAYQVFMAACCFKW 283 689**************************************************.666666777777777899************** PP GRAS 93 fshltaNqaIleavegeervHiiDfdis.qGlQWpaLlqaLasRpegppslRiTgvg 148 +++ aN Il+a+eg +r+Hi+D++ + +GlQWp+Llq La+R++gpp++R + + ORGLA11G0021800.1 284 VAFTFANMGILRAAEGRSRLHIVDYGGQyHGLQWPSLLQRLAEREGGPPEFRAVAAA 340 *********************86538*******************976655 PP
2	GRAS	135.2	7.2e-42	333	535	177	373
GRAS 177 efnvlvakrledleleeL.rvkp..gEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealey 263 ef++++a r+e+++ e+ v+p + a++Vn vl+l +l+des+ ++ +rd+vL +++++P v+v + + h+++ F ++f eal + ORGLA11G0021800.1 333 EFRAVAAARWETVTAEDVvGVDPddEAAVVVNDVLSLGTLMDESGVFDDpsPRDTVLGSIRDMRPAVFVQAVVNGAHGAPFFPTGFREALFF 424 79999999***99987577777455899**********98877779************************************ PP GRAS 264 ysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354 + alfd+l a+ p+e + r+++Er +l+r++v v+a egaer+er et+++W++r ++aG+++++++ ++++ +++ +r+ + +++ +ee+ ORGLA11G0021800.1 425 FLALFDMLGATTPEEGsHLRVVLERDVLRRAAVGVIAGEGAERVERPETYRRWQARNRRAGLRQAAVEGDVVEAVRRRVRRRHHEEFVIEED 516 ****77777765499************************************************************999** PP GRAS 355 sgslvlgWkdrpLvsvSaW 373 g+l++gWk+r L++ SaW ORGLA11G0021800.1 517 AGWLLQGWKGRILYAHSAW 535 ***************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	32.524	167	516	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.5E-39	333	535	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 543 aa Download sequence Send to blast
FLPFCHFDER SSSCGAALLE FMGPAAPPSE AAAAADDVVL PYISRILMEE DIDDDMFFCL 60 YPDHPALLEA QQPFAQILSS SSGIAGEVNS APMEDSAALM MQGSGNGRGR KGSKHGGDEL 120 EAEVGRASKL MATPEEEEDD DDGVGEMLEK MMLNGDEDEA FHGETNAPRV PAEKKCGKAA 180 RRRRQAKGEV VDLRELLMSC AQAVASGNRR SAGELLEQIK RHSSPTGDAT ERLAHYFADG 240 LEARLAGAAS LECRLVASAE ERASAMELLE AYQVFMAACC FKWVAFTFAN MGILRAAEGR 300 SRLHIVDYGG QYHGLQWPSL LQRLAEREGG PPEFRAVAAA RWETVTAEDV VGVDPDDEAA 360 VVVNDVLSLG TLMDESGVFD DPSPRDTVLG SIRDMRPAVF VQAVVNGAHG APFFPTGFRE 420 ALFFFLALFD MLGATTPEEG SHLRVVLERD VLRRAAVGVI AGEGAERVER PETYRRWQAR 480 NRRAGLRQAA VEGDVVEAVR RRVRRRHHEE FVIEEDAGWL LQGWKGRILY AHSAWVVAED 540 GAH

Sequence ? help Back to Top

Protein Sequence Length: 543 aa Download sequence Send to blast

FLPFCHFDER SSSCGAALLE FMGPAAPPSE AAAAADDVVL PYISRILMEE DIDDDMFFCL  60
YPDHPALLEA QQPFAQILSS SSGIAGEVNS APMEDSAALM MQGSGNGRGR KGSKHGGDEL  120
EAEVGRASKL MATPEEEEDD DDGVGEMLEK MMLNGDEDEA FHGETNAPRV PAEKKCGKAA  180
RRRRQAKGEV VDLRELLMSC AQAVASGNRR SAGELLEQIK RHSSPTGDAT ERLAHYFADG  240
LEARLAGAAS LECRLVASAE ERASAMELLE AYQVFMAACC FKWVAFTFAN MGILRAAEGR  300
SRLHIVDYGG QYHGLQWPSL LQRLAEREGG PPEFRAVAAA RWETVTAEDV VGVDPDDEAA  360
VVVNDVLSLG TLMDESGVFD DPSPRDTVLG SIRDMRPAVF VQAVVNGAHG APFFPTGFRE  420
ALFFFLALFD MLGATTPEEG SHLRVVLERD VLRRAAVGVI AGEGAERVER PETYRRWQAR  480
NRRAGLRQAA VEGDVVEAVR RRVRRRHHEE FVIEEDAGWL LQGWKGRILY AHSAWVVAED  540
GAH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	5e-24	200	536	26	379	Protein SCARECROW
5b3h_A	4e-24	200	536	25	378	Protein SCARECROW
5b3h_D	4e-24	200	536	25	378	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA11G0021800.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FQ378034	0.0	FQ378034.1 Oryza glaberrima chromosome 11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015619736.1	0.0	scarecrow-like protein 30
TrEMBL	I1QXH6	0.0	I1QXH6_ORYGL; Uncharacterized protein
STRING	ORGLA11G0021800.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP16018	10	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	3e-67	SCARECROW-like 14