PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA11G0021400.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 427aa    MW: 46163.2 Da    PI: 6.5711
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA11G0021400.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM40.67.8e-1326336129128
                NAM  29 eleevikevdiykvePwdLp.k.....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrap 114
                        ++e++i ++d+y +eP+dL  k     +   e+    fF++ ++++ +++rk+r++ +g+W  + + k v++k g +vg  + + f     +
  ORGLA11G0021400.1 263 DTEKFICRADVYGSEPSDLAgKfapvpR--CEKGGRLFFTSCKRQEGSSTRKERTAGDGTWVRQNS-KGVKNKAGVKVGETQNFRFK----K 347
                        4446799************843454222..2445789*************************8866.889999*************7....7 PP

                NAM 115 kgektdWvmheyrl 128
                        +g+ tdW+m+e + 
  ORGLA11G0021400.1 348 DGSYTDWLMEEHHC 361
                        8999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF534742.49E-3221265IPR029058Alpha/Beta hydrolase fold
Gene3DG3DSA:3.40.50.18205.1E-4626264IPR029058Alpha/Beta hydrolase fold
PfamPF078595.5E-3096269IPR013094Alpha/beta hydrolase fold-3
PROSITE profilePS5100514.213232381IPR003441NAC domain
SuperFamilySSF1019412.62E-13266381IPR003441NAC domain
PfamPF023658.0E-5278360IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0016787Molecular Functionhydrolase activity
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MATLPQMAAT KERQEAANPT TTTRTLVESV TNWIRVYSDG SVDRLGPPEA AAFMVLVPPY  60
DDPRDGVTVH DVATDHGVDV RLYLTTTAPA RRRPVLVHFH GGGFCLSHAA WSLYHRFYAR  120
LAVDLDVAGI VSVVLPLAPE HRLPAAIDAG HAALLWLRDV ASGGSDTIAH PAVERLCGAA  180
DFSRVFLIGD SAGGVLVHNV AARAGEAGAE ALDPIRLAGG VQLHPGFILP EKSPSELENP  240
PTPFMTQETV DKFVVLALPP TKDTEKFICR ADVYGSEPSD LAGKFAPVPR CEKGGRLFFT  300
SCKRQEGSST RKERTAGDGT WVRQNSKGVK NKAGVKVGET QNFRFKKDGS YTDWLMEEHH  360
CCRQQAVAGD EEPVICRMYV SPRAPPDSAA RQESAAFVQQ QPALQVSEPP CDKKKRDDVA  420
EEAPAAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2o7r_A5e-236727053247CXE carboxylesterase
2o7v_A5e-236727053247CXE carboxylesterase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA11G0021400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3780340.0FQ378034.1 Oryza glaberrima chromosome 11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618312.11e-166probable carboxylesterase 17
TrEMBLI1QXH20.0I1QXH2_ORYGL; Uncharacterized protein
STRINGORGLA11G0021400.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123478