PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA11G0014000.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 289aa    MW: 32398.9 Da    PI: 8.5764
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA11G0014000.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM91.31.7e-2848456128
                NAM  56 kewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +ew +Fs++d ky+tg r+nratk+gyWkatgkd+e+++          +++lvg+kktLvfy grapkg++t+Wvmhe+rl
  ORGLA11G0014000.1   4 NEW-YFSRKDMKYPTGMRTNRATKEGYWKATGKDREIFKPaiyegssknNKQLVGMKKTLVFYMGRAPKGTRTNWVMHEFRL 84 
                        455.6899*******************************99999999887888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100534.8281110IPR003441NAC domain
SuperFamilySSF1019411.83E-323110IPR003441NAC domain
PfamPF023651.8E-12684IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MGNNEWYFSR KDMKYPTGMR TNRATKEGYW KATGKDREIF KPAIYEGSSK NNKQLVGMKK  60
TLVFYMGRAP KGTRTNWVMH EFRLHANLHN HYPNLRLNPN EWVVCKVFHK KQRDEAINNQ  120
QQQPAVDQAD DDDIFQLDDI FADPSIYDFS NSSANVLSAP PNNNAVHSSV SAGTTMTSTT  180
TASSFQHQPN CYSAPLQQHV SSWNNTPGAG GAHGIGSSYY NLQQQQQQQA AMVKDLEDII  240
AVPDYGTLLP SSNKGSSIRS ATAGVSQQNP LGVPQYKIEN YGDHYISRE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-25111168166NO APICAL MERISTEM PROTEIN
1ut4_B2e-25111168166NO APICAL MERISTEM PROTEIN
1ut7_A2e-25111168166NO APICAL MERISTEM PROTEIN
1ut7_B2e-25111168166NO APICAL MERISTEM PROTEIN
3swm_A3e-25111171169NAC domain-containing protein 19
3swm_B3e-25111171169NAC domain-containing protein 19
3swm_C3e-25111171169NAC domain-containing protein 19
3swm_D3e-25111171169NAC domain-containing protein 19
3swp_A3e-25111171169NAC domain-containing protein 19
3swp_B3e-25111171169NAC domain-containing protein 19
3swp_C3e-25111171169NAC domain-containing protein 19
3swp_D3e-25111171169NAC domain-containing protein 19
4dul_A2e-25111168166NAC domain-containing protein 19
4dul_B2e-25111168166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response (By similarity). Binds to DNA-specific sequences of CLPD1 and OAT promoters in vitro (PubMed:18813954). {ECO:0000250|UniProtKB:Q7F2L3, ECO:0000269|PubMed:18813954}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA11G0014000.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1235190.0AC123519.2 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0017B18, complete sequence.
GenBankAC1235250.0AC123525.2 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0056E15, complete sequence.
GenBankAK2882710.0AK288271.1 Oryza sativa Japonica Group cDNA, clone: J090017A22, full insert sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616089.10.0NAC domain-containing protein 77-like
SwissprotQ5CD171e-143NAC77_ORYSJ; NAC domain-containing protein 77
TrEMBLI1QX980.0I1QX98_ORYGL; Uncharacterized protein
STRINGORGLA11G0014000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51203063
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07680.24e-40NAC domain containing protein 80