PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA10G0168200.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 269aa MW: 28278.8 Da PI: 8.1624

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA10G0168200.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.3	5.9e-05	97	119	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ CgksFs+ L H +H ORGLA10G0168200.1 97 FKCSVCGKSFSSYQALGGHKTSH 119 89**********99998888777 PP
2	zf-C2H2	13	0.0003	166	188	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C k F++ L H r+H ORGLA10G0168200.1 166 HRCSICQKEFPTGQALGGHKRKH 188 79*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	1.2E-12	97	120	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.3E-4	97	119	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	12.03	97	124	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0046	97	119	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	3.12E-9	97	119	No hit	No description
PROSITE pattern	PS00028	0	99	119	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.12E-9	161	188	No hit	No description
Pfam	PF13912	5.1E-12	165	190	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.028	166	188	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.078	166	188	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	168	188	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MSSASSMEAL HAAVLKEEQQ QHEVEEATVV TSSSATSGEE GGHLPQGWAK RKRSRRQRSE 60 EENLALCLLM LARGGHHRVQ APPPLSASAP PPAGAEFKCS VCGKSFSSYQ ALGGHKTSHR 120 VKLPTPPAAP VLAPAPVAAL LPSAEDREPA TSSTAASSDG MTNRVHRCSI CQKEFPTGQA 180 LGGHKRKHYD GGVGAGAGAS STELLATVAA ESEVGSSGNG QSATRAFDLN LPAVPEFVWR 240 PCSKGKKMWD DEEEVQSPLA FKKPRLLTA

Functional Description ? help Back to Top
Source	Description
UniProt	Potential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269\|PubMed:8223628}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA10G0168200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC090713	0.0	AC090713.6 Oryza sativa chromosome 3 BAC OSJNBa0002J24 genomic sequence, complete sequence.
GenBank	AP014959	0.0	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015633313.1	0.0	zinc finger protein 1
Swissprot	Q42430	1e-117	ZFP1_WHEAT; Zinc finger protein 1
TrEMBL	I1PFS5	0.0	I1PFS5_ORYGL; Uncharacterized protein
STRING	ORGLA03G0322100.1	0.0	(Oryza glaberrima)
STRING	ORGLA10G0168200.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1022	36	113

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27730.1	3e-30	salt tolerance zinc finger