PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA10G0144100.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 329aa MW: 35993.8 Da PI: 6.5057

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA10G0144100.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170.7	4.5e-53	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtd+elv +yLk+kv++ k+el evi+ +d+yk+ePw+Lp k + +++ ew+fF++rd+ky++g+r+nrat++gyWkatgkd+ ORGLA10G0144100.1 6 LPPGFRFHPTDDELVGYYLKRKVDSLKIEL-EVIPVIDLYKFEPWELPeKsFLPKRDLEWFFFCPRDRKYPNGSRTNRATSTGYWKATGKDR 96 79**************************.99**********95334445667****************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ + ge+ gl+ktLvfykgrap ge+tdWvmheyrl ORGLA10G0144100.1 97 KIAC-AGEVFGLRKTLVFYKGRAPGGERTDWVMHEYRL 133 .999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.92E-61	3	155	IPR003441	NAC domain
PROSITE profile	PS51005	57.838	6	156	IPR003441	NAC domain
Pfam	PF02365	4.6E-29	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008283	Biological Process	cell proliferation
GO:0071365	Biological Process	cellular response to auxin stimulus
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MGTMTLPPGF RFHPTDDELV GYYLKRKVDS LKIELEVIPV IDLYKFEPWE LPEKSFLPKR 60 DLEWFFFCPR DRKYPNGSRT NRATSTGYWK ATGKDRKIAC AGEVFGLRKT LVFYKGRAPG 120 GERTDWVMHE YRLCQDLAHG VSNFIGAYAL CRVIKRHEAG LHGEPPAAKA KGMISKVSSS 180 SSLVTVEHQL SSRGNASPSF TPTNNGSPLV DKMFVGGGGG DPFQLLPSCV PYHGGDACGF 240 DLPPLCMPQT QDPFFSDAGF TQAAPPLYGD VMGSVSEHEL KWDTLGGYSG GGGGELWNAA 300 AAPLLCRQAS DGDDLTAWFT AADDNMSVF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-53	1	160	12	169	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-53	1	160	12	169	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-53	1	160	12	169	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-53	1	160	12	169	NO APICAL MERISTEM PROTEIN
3swm_A	6e-53	1	160	15	172	NAC domain-containing protein 19
3swm_B	6e-53	1	160	15	172	NAC domain-containing protein 19
3swm_C	6e-53	1	160	15	172	NAC domain-containing protein 19
3swm_D	6e-53	1	160	15	172	NAC domain-containing protein 19
3swp_A	6e-53	1	160	15	172	NAC domain-containing protein 19
3swp_B	6e-53	1	160	15	172	NAC domain-containing protein 19
3swp_C	6e-53	1	160	15	172	NAC domain-containing protein 19
3swp_D	6e-53	1	160	15	172	NAC domain-containing protein 19
4dul_A	6e-53	1	160	12	169	NAC domain-containing protein 19
4dul_B	6e-53	1	160	12	169	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269\|PubMed:21911380, ECO:0000269\|PubMed:25182467, ECO:0000269\|PubMed:27986917}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00439	DAP	Transfer from AT4G17980	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA10G0144100.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by wounding in the flowering stem. {ECO:0000269\|PubMed:21911380}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT833247	0.0	CT833247.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI241J15, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015612876.1	0.0	NAC domain-containing protein 71
Swissprot	O49697	1e-83	NAC71_ARATH; NAC domain-containing protein 71
TrEMBL	A0A0D3HGU3	0.0	A0A0D3HGU3_9ORYZ; Uncharacterized protein
TrEMBL	I1QW58	0.0	I1QW58_ORYGL; Uncharacterized protein
STRING	ORGLA10G0144100.1	0.0	(Oryza glaberrima)
STRING	OBART10G19230.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6209	38	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17980.1	1e-84	NAC domain containing protein 71

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Asahina M,Satoh S Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues. J. Plant Res., 2015. 128(3): p. 381-8 [PMID:25736731] Matsuoka K, et al. Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls. Plant Cell Physiol., 2016. 57(12): p. 2620-2631 [PMID:27986917]