PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA10G0139200.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 315aa    MW: 33545.7 Da    PI: 9.1253
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA10G0139200.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix62.31.1e-1935120586
           trihelix   5 qevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         e+laLiea+r+++e lr+g+l++ +W++v+ ++        +  ++s +qC++k+e+l+kry+++++++ +r+++   ++p+f  l+
  ORGLA10G0139200.1  35 AETLALIEAYRDRWEGLRKGNLRASDWDDVAGAVtarcgrFPTATHKSGVQCRHKIEKLRKRYRAERARAAGRSKG--PKWPFFPLLH 120
                        79********************************99998888899**************************98443..47****9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.5E-1834121No hitNo description
SMARTSM005951.1E-539123IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MSSSSSPPPN PDALSSPDLP PLAAPAAAAA AAAAAETLAL IEAYRDRWEG LRKGNLRASD  60
WDDVAGAVTA RCGRFPTATH KSGVQCRHKI EKLRKRYRAE RARAAGRSKG PKWPFFPLLH  120
DLAGGGAPDP SPNPIIKIKS KGPAAAAASP SPASPSPVSS PSSEEDEEEE AAADAGRSRS  180
LHGLISNGGS GSGLRFTIPK ASRSKPVAQR EQPTAIKVEK SEEDAEAEAM AEVASALRAV  240
GDKFLRMEER RLEISLQIEK ERMESEMKRT QTLLDAQQLF VEAFLGKQQH HHHHHKKAKV  300
ISAAAAAATA AMDED
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA10G0139200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0847630.0AC084763.4 Oryza sativa chromosome 10 BAC OSJNBa0027P10 genomic sequence, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankCP0126180.0CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006662073.11e-141PREDICTED: trihelix transcription factor ASIL2-like, partial
TrEMBLI1QW090.0I1QW09_ORYGL; Uncharacterized protein
STRINGORGLA10G0139200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56893250
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.11e-14Trihelix family protein