PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA10G0133200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 464aa MW: 48744.6 Da PI: 6.9847 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 50.5 | 3.8e-16 | 280 | 325 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hne Er+RRdriN+++ +L++l+P++ K +Ka++L ++++Y+k+Lq ORGLA10G0133200.1 280 HNESERKRRDRINQKMKTLQKLVPNS-----SKTDKASMLDEVIDYLKQLQ 325 *************************8.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 18.025 | 275 | 324 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.16E-19 | 278 | 346 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.1E-18 | 280 | 333 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.69E-18 | 280 | 329 | No hit | No description |
Pfam | PF00010 | 1.0E-13 | 280 | 325 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-18 | 281 | 330 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009567 | Biological Process | double fertilization forming a zygote and endosperm | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 464 aa Download sequence Send to blast |
MNQCVPSWDL DDPVGGGGIG GGGGGGHRVV SGGGGAFMPV AVPTSDQYYE VAELTWEKGN 60 ISSHGLLLNR PAPPKFPPHQ QLQAAMGGGG GGGVVGDRET LEAVVGEAAA RSSSSSHLAA 120 RARPVPAPWL GSVGVVAAAD ALVPCDADAA EGRSKRPRVV VGEDGRRACA SQGSAAPGRR 180 GESTLLTLDA CCGTAADDVC GFTTTTNNST SLEDRTEDKG SPETENTSIA GGASDSRCFS 240 RRSQSQRGGM CDEDEHVVIR GEGAMRSSIS TKRSRAAAIH NESERKRRDR INQKMKTLQK 300 LVPNSSKTDK ASMLDEVIDY LKQLQAQVQV MSRMGSMMMP MGMAMPQLQM SVMAQMAQMA 360 QIGLSMMNMG QAGGYAPMHM HTPPFLPVSW DAAASSSSAA AADRPPQPTG AATSDAFSAF 420 LASQAAQQNA QQPNGMEAYN RMMAMYQKLN HQQQQQDQPS NSRQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 283 | 288 | ERKRRD |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00034 | PBM | Transfer from AT4G00050 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA10G0133200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK287925 | 0.0 | AK287925.1 Oryza sativa Japonica Group cDNA, clone: J065218F01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015612716.1 | 0.0 | transcription factor UNE10 isoform X1 | ||||
Refseq | XP_015612717.1 | 0.0 | transcription factor UNE10 isoform X1 | ||||
TrEMBL | I1QVU9 | 0.0 | I1QVU9_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA10G0133200.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7474 | 31 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00050.1 | 7e-36 | bHLH family protein |