PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA10G0130100.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 612aa    MW: 66422.4 Da    PI: 9.1881
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA10G0130100.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS259.41.3e-79363662343
               GRAS   2 velLlecAeavssgdlelaqalLarlsel...aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                        ve+L e+A+  ++gd+  a+++Larl+ +   a  +g+p+ R a+yf+eAL+  l+     + +a +ps++++++++ +l a+k+fsevsP+
  ORGLA10G0130100.1  36 VEQLAEAAKLAEAGDAFGAREILARLNYRlpaAPTAGTPLLRSAFYFKEALRLALSP----TGDAPAPSASTPYDVVVKLGAYKAFSEVSPV 123
                        789*************************999555566******************99....999999************************* PP

               GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                        l+f+hlt+ qa+l+++ g+ ++H++Dfdi++G QW++L+q+La+R ++++ l++T+++sp+s++  el+ ++e+L+ fA+elgv f+f+v+ 
  ORGLA10G0130100.1 124 LQFAHLTCVQAVLDELGGAGCIHVLDFDIGMGEQWASLMQELAQR-RPAAALKVTALVSPASHHPLELQLIHENLSGFAAELGVFFHFTVF- 213
                        ********************************************9.7889****************************************9. PP

               GRAS 183 akrledleleeL.rvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
                          ++++l++ eL ++ + g+a+aV+l +   +          ++++vL+lvk+l +kvvv v++ +d+++ +F+++++++++  ++l++s++
  ORGLA10G0130100.1 214 --NIDTLDPAELlAIATaGDAVAVHLPVGPAHAA--------ATPAVLRLVKRLGAKVVVSVDRGCDRSDLPFAAHLFHSFHSAVYLLESID 295
                        ..7777777665366668**********999997........5678*********************************************9 PP

               GRAS 273 aklpreseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343
                        a  +++ ++++k+Er l++++i+++v +++++ + +++     Wr+++ +aGF pv+ +++a++qa++ll+k
  ORGLA10G0130100.1 296 AV-GTDPDTASKIERYLIHPAIEQCVVARHRAaSAMDKAPPPPWRAAFAAAGFAPVQATTFAESQAESLLSK 366
                        98.7888*****************98888776589999999*****************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.2869377IPR005202Transcription factor GRAS
PfamPF035144.4E-7736366IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MAAAPAPKLP PFPAGGFVPA LKPKAEAAND EAAAAVEQLA EAAKLAEAGD AFGAREILAR  60
LNYRLPAAPT AGTPLLRSAF YFKEALRLAL SPTGDAPAPS ASTPYDVVVK LGAYKAFSEV  120
SPVLQFAHLT CVQAVLDELG GAGCIHVLDF DIGMGEQWAS LMQELAQRRP AAALKVTALV  180
SPASHHPLEL QLIHENLSGF AAELGVFFHF TVFNIDTLDP AELLAIATAG DAVAVHLPVG  240
PAHAAATPAV LRLVKRLGAK VVVSVDRGCD RSDLPFAAHL FHSFHSAVYL LESIDAVGTD  300
PDTASKIERY LIHPAIEQCV VARHRAASAM DKAPPPPWRA AFAAAGFAPV QATTFAESQA  360
ESLLSKLLPL PVLEMQRKGG NHGVKRPCFT EMAAKHLRVR TGTSRTAAAA LDGYTSLTWD  420
SAPEWPWHRM HKPDRLRWAH WRVTGEPQCA AGAVAIGQAS GHTGVRDTAG ANWQETCIVV  480
TEMDVKLADK FRKKWYHSSK LQKRRCTVGL IKQDLKVQNQ GGESEASRHK GLQISFRQVQ  540
ISLRKPNRKC KHSGQTVKLI NENCYYLSTK RNNLKTKEVN YICYIYAEEL HPLKVMFRNT  600
QAKICQIDVQ KS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-226736432340GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA10G0130100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126180.0CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184487.10.0scarecrow-like protein 6
TrEMBLI1QVR80.0I1QVR8_ORYGL; Uncharacterized protein
STRINGORGLA10G0130100.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67232954
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.16e-65GRAS family protein