PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA10G0101900.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 277aa    MW: 31025.3 Da    PI: 8.8092
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA10G0101900.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.94.1e-07185232348
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 
                         WT  E   lv++v ++G g+W+   r +     Rt  ++k++w+++l
  ORGLA10G0101900.1 185 HWTIKEVTNLVQGVSKHGVGRWTELKRDFFstSIRTSVHLKDKWRNLL 232
                        6****************************99989************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.53178236IPR017930Myb domain
SuperFamilySSF466891.03E-14180267IPR009057Homeodomain-like
SMARTSM007170.0016182234IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-10185233IPR009057Homeodomain-like
CDDcd116603.14E-20186233No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MEKAAAAACG WRKGLEEGEP EWEAMELEAA APAIFPADGG GGGGRRSPAA STIFLPDLLD  60
GSFLSDDILP DLSQMEDIFQ PAHEDDIHHL LQGPQDEADL DKWLAGQSCS PAAEGSITVQ  120
TPTYPILNLI DFIPKDGCKR GPRGARKRQT FPSRGARTRR AFPLQQLCFG TTRDKRCRLR  180
KNNDHWTIKE VTNLVQGVSK HGVGRWTELK RDFFSTSIRT SVHLKDKWRN LLKACGIDFT  240
STAKGNAQKT MLWPLDKRLI EQITQLAYKH PYPRQKY
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA10G0101900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0716450.0AK071645.1 Oryza sativa Japonica Group cDNA clone:J023105M22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613839.10.0uncharacterized protein LOC4348738 isoform X2
TrEMBLI1QUY60.0I1QUY6_ORYGL; Uncharacterized protein
STRINGORGLA10G0101900.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52252134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.18e-17TRF-like 6