PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA10G0084900.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 346aa    MW: 37463.1 Da    PI: 4.6576
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA10G0084900.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM583.3e-18111363127
                NAM   3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvka.eekew..yfFskrdkkyatgkrknratksgyWkatgkdk 90 
                        +G+rF P+d el+   L +k++g++  ++e ++++++i++++P +L +++++ ee+e   yfFs+ + +    k  +ra++ g+Wk     +
  ORGLA10G0084900.1  11 AGVRFLPKDLELL-AILDAKLRGSPlGPVEAIFHDTQILDFHPYKLYEMYAEdEEEEGyiYFFSTMQFRC--RKIVERAAQGGRWKVNNC-E 98 
                        7************.78*********54555569*************743333133333347777776665..57899*********7655.3 PP

                NAM  91 evlskkgelvglkktLvfyk..grapkgektdWvmheyr 127
                        ++ + ++ +vg k t+ fy+  g +++   t+W m+e++
  ORGLA10G0084900.1  99 TLEV-GSVAVGRKFTMNFYEhiGGDNDLIWTNWGMQEFA 136
                        3444.789***********5336788889********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.84E-265156IPR003441NAC domain
PROSITE profilePS5100521.4339156IPR003441NAC domain
PfamPF023655.9E-1011136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MAALEGQNKF AGVRFLPKDL ELLAILDAKL RGSPLGPVEA IFHDTQILDF HPYKLYEMYA  60
EDEEEEGYIY FFSTMQFRCR KIVERAAQGG RWKVNNCETL EVGSVAVGRK FTMNFYEHIG  120
GDNDLIWTNW GMQEFARIIG PNKELADLAL YRLYKKKITR GTGEEKPEDI AAASDGDTES  180
SMNKRRRVEA SAAAMALPPP PPSPGLPGTM MFMAADQANV ASTSQEWHGQ FANGAAAAPS  240
PSGCWPWAPP PTPSAVEPFS FWASASAATP PAAANYHPSP PPPPPQSGEY YSRHGAFSAA  300
PVPASACSTP SPEAVTSCLL TSPLPAAGTE GSDSQQQEPP CELMEF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183187KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA10G0084900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1109420.0AK110942.1 Oryza sativa Japonica Group cDNA clone:002-173-H02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025876515.10.0uncharacterized protein LOC4348617
TrEMBLA0A0D3HDM30.0A0A0D3HDM3_9ORYZ; Uncharacterized protein
TrEMBLI1QUG60.0I1QUG6_ORYGL; Uncharacterized protein
STRINGORGLA10G0084900.10.0(Oryza glaberrima)
STRINGOBART10G09850.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1920699