PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA10G0081400.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Dof

Protein Properties

Length: 430aa MW: 45404.5 Da PI: 8.2529

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA10G0081400.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.6	6.4e-39	84	143	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC s++tkfCy+nny+++qPr+fCk C+ryWt+GGa+rnvPvG+grrknk++ ORGLA10G0081400.1 84 PDKILPCPRCSSMDTKFCYFNNYNVNQPRHFCKHCQRYWTAGGAMRNVPVGAGRRKNKNA 143 7899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-38	71	141	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.3E-31	86	142	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.574	88	142	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	90	126	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence Send to blast
GGGGDGLIKL FGKTIPVQPD AKDVQQHSGS SSSSTESDVQ ETAAVAVADP SPRSEVVDGE 60 SPPQPGGEAA SHQQQQKEMK LKKPDKILPC PRCSSMDTKF CYFNNYNVNQ PRHFCKHCQR 120 YWTAGGAMRN VPVGAGRRKN KNATAAAHFL HRVRACAAAA AMPAAPHDAT NATVLSFGGG 180 GGGHDAPPVT LDLADKMTRL GKEGLVAHAR NADAAAACSE VSSNRDDEQI GNTVAKPTNG 240 LQQHPPPPPH HHHSAMNGGG IWPYYTSGIA IPIYPAAPAY WGCMIPPPGA WSLPWPATVQ 300 SQAISSSSPP TSATPSVSSF TLGKHPREGG DHEARDHHGN GKVWVPKTIR IDNADEVARS 360 SIRSLFAFRG GDKADDNNDD DGTGVHKLAT TVFEPKRDGK TAKHPAITSL PLLHTNPVAL 420 TRSATFQEGS

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence Send to blast

GGGGDGLIKL FGKTIPVQPD AKDVQQHSGS SSSSTESDVQ ETAAVAVADP SPRSEVVDGE  60
SPPQPGGEAA SHQQQQKEMK LKKPDKILPC PRCSSMDTKF CYFNNYNVNQ PRHFCKHCQR  120
YWTAGGAMRN VPVGAGRRKN KNATAAAHFL HRVRACAAAA AMPAAPHDAT NATVLSFGGG  180
GGGHDAPPVT LDLADKMTRL GKEGLVAHAR NADAAAACSE VSSNRDDEQI GNTVAKPTNG  240
LQQHPPPPPH HHHSAMNGGG IWPYYTSGIA IPIYPAAPAY WGCMIPPPGA WSLPWPATVQ  300
SQAISSSSPP TSATPSVSSF TLGKHPREGG DHEARDHHGN GKVWVPKTIR IDNADEVARS  360
SIRSLFAFRG GDKADDNNDD DGTGVHKLAT TVFEPKRDGK TAKHPAITSL PLLHTNPVAL  420
TRSATFQEGS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA10G0081400.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC021893	0.0	AC021893.18 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0060A14, from chromosome 10, complete sequence.
GenBank	AP014966	0.0	AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBank	CP012618	0.0	CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015615013.1	0.0	cyclic dof factor 1
TrEMBL	I1QUD1	0.0	I1QUD1_ORYGL; Uncharacterized protein
STRING	ORGLA10G0081400.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2099	37	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62430.1	4e-39	cycling DOF factor 1