PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA10G0076800.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YA
Protein Properties Length: 166aa    MW: 18332.8 Da    PI: 10.351
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA10G0076800.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA75.79.1e-2467123158
          CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                        dep+YVNaKQy++I++RRq+R+ + +e+k+ ++ rk++l e+R+k+A+ R+Rg+gGrF
  ORGLA10G0076800.1  67 DEPIYVNAKQYHAIIRRRQRRKIVGSEDKV-AAIRKRILVEARQKQAKLRRRGKGGRF 123
                        79****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.4E-1765126IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115222.33766126IPR001289Nuclear transcription factor Y subunit A
PfamPF020458.9E-1768123IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.5E-136991IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.5E-13100123IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MGFGESTQGN QRKLDGPGKV STELSLVNLE AKNLHPKPEC NQPLEHIPTK GMKCTPLLPL  60
PTEHADDEPI YVNAKQYHAI IRRRQRRKIV GSEDKVAAIR KRILVEARQK QAKLRRRGKG  120
GRFISIEHPL ELSMDDQISK NGGSASPSSS TVSENSSNVN GFTGDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-1367125260NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA10G0076800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8470050.0EU847005.1 Oryza sativa Japonica Group clone KCS241E10 CCAAT-binding transcription factor mRNA, complete cds.
GenBankHQ7314780.0HQ731478.1 Oryza sativa Japonica Group NF-Y transcription factor 21 (NF-Y21) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613426.11e-119nuclear transcription factor Y subunit A-3
TrEMBLA0A0E0BA541e-119A0A0E0BA54_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0IRU31e-119A0A0E0IRU3_ORYNI; Uncharacterized protein
TrEMBLI1QU851e-119I1QU85_ORYGL; Uncharacterized protein
STRINGONIVA10G08670.11e-120(Oryza nivara)
STRINGORGLA10G0076800.11e-120(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP174681010
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.11e-17nuclear factor Y, subunit A3