PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA10G0066800.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CAMTA
Protein Properties Length: 1021aa    MW: 114083 Da    PI: 5.9448
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA10G0066800.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1179.63.7e-56201372118
               CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 
                        lke ++rwl++ ei++iL+n+++++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+he+LK g+++vl+cyYah+een+
  ORGLA10G0066800.1  20 LKEaQQRWLRPAEICEILKNYKSFRIAPEPPNRPQSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKSGSIDVLHCYYAHGEENE 111
                        45559*************************************************************************************** PP

               CG-1  93 tfqrrcywlLeeelekivlvhylevk 118
                        +fqrr+yw+Lee++ +ivlvhyle+k
  ORGLA10G0066800.1 112 NFQRRTYWMLEEDFMHIVLVHYLETK 137
                        ***********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143782.9316142IPR005559CG-1 DNA-binding domain
SMARTSM010761.5E-7719137IPR005559CG-1 DNA-binding domain
PfamPF038598.4E-5022135IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.7E-6441527IPR013783Immunoglobulin-like fold
CDDcd001020.00535441529No hitNo description
PfamPF018331.8E-8442520IPR002909IPT domain
SuperFamilySSF812962.96E-18442528IPR014756Immunoglobulin E-set
SuperFamilySSF484032.64E-15634737IPR020683Ankyrin repeat-containing domain
CDDcd002041.45E-11637735No hitNo description
Gene3DG3DSA:1.25.40.204.9E-16637739IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.459643737IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.736676708IPR002110Ankyrin repeat
SuperFamilySSF525407.97E-8837889IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.37838860IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.748839868IPR000048IQ motif, EF-hand binding site
PfamPF006120.023840859IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0059861883IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.542863886IPR000048IQ motif, EF-hand binding site
PfamPF006122.0E-4864883IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1021 aa     Download sequence    Send to blast
MAADARRFAV VPQLDIAQIL KEAQQRWLRP AEICEILKNY KSFRIAPEPP NRPQSGSLFL  60
FDRKVLRYFR KDGHNWRKKK DGKTVKEAHE RLKSGSIDVL HCYYAHGEEN ENFQRRTYWM  120
LEEDFMHIVL VHYLETKGGK SRTRGNNDMH QAAVMDSPLS QLPSQTIDGE SSLSGQFSEY  180
EEAESDIYSG GTGYHSFTQM QQQQNGIGPV TDASMFSSRV SASSIGNYQG QHAMGHTTNF  240
YSSNQHDSPL VLSDPNLELE NNGHESLWNG VMKPDEGTVQ MTHLQPPVHP EQGMFTTEGQ  300
GVEYLTFDEV YSDGLSLKDI GAAGADVEPF WQLSSATADI SATENSVQQN DGSLGAAIGF  360
PFLKTQSSNL SDILKDSFKK SDSFTRWMSK ELLDVEDSQI QSSSGAYWNT EEADSIIEAS  420
SREPLDQFTV APMVLQDQLF SIVDFSPSWT YAGSKTKVLV TGRFLHANEV TERCKWSCMF  480
GEVEIQAEIS ADGTLRCYSP PHKPGRVPFY VTCSNRLACS EVREFEFRPS DSQYMDAPSP  540
LGATNKVYFQ IRLDNLLSLG PDVYQATITN PSKEMIDLSK KISSLLANND EWSKLLKLAD  600
DNEPLSHDQQ DQYAENLIKE KLHVWLLHKV GDGGKGPSVL DDEGLGVLHL AASLGYDWAI  660
RPTVTAGVNI NFRDFHGWTA LHWAAFCGRE RTVVALIALG AAPGALTDPH PNYPAESTPA  720
DLASANGHKG ISGFLAESSL TSHLQALNLK EANMSEISGL PGIGDITERN ASQPAIGDSL  780
GAVRNAAQAA ARIYQVFRVQ SFQRKQAVQY EGDKGGISDE HALSLLSMKP SKSGQIDPLH  840
AAASRIQNKY RGWKGRKEFL LFRQRIVKIQ AHVRGHQVRK HYRKIVWSVG IVEKVILRWR  900
RRRAGLRGFR PTEGAIESSS GGTSSNLVTD KPAGDDYDFL QEGRKQTEER LQKALARVKS  960
MVQYPEARDQ YQRILNVVSK MQESQTVQEK ILDESTEMDE GDFMSEFKEL WDDDTPLPGY  1020
F
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA10G0066800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1051160.0AK105116.1 Oryza sativa Japonica Group cDNA clone:001-100-H10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614397.10.0calmodulin-binding transcription activator 3 isoform X2
TrEMBLI1QTY50.0I1QTY5_ORYGL; Uncharacterized protein
STRINGORGLA10G0066800.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains