PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA10G0057400.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 199aa    MW: 22758 Da    PI: 10.4875
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA10G0057400.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.93.6e-162367348
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +WT+eEd +l ++ k+ G ++W+++ar m+ +R++ +c++rw+ +l
  ORGLA10G0057400.1 23 AWTPEEDARLQRLAKENGFRRWSRVARSMP-RRSARSCRDRWRHHL 67
                       7*****************************.***********9886 PP
2Myb_DNA-binding24.46.8e-0875118348
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        ++T+ +d+ l++++ +lG + Wk I r +  gRt    k+rw+ ++
  ORGLA10G0057400.1  75 PFTARDDDELLRLHYRLGDR-WKEIGRAVY-GRTSRVMKHRWRELR 118
                        79****************99.********9.***********9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.1151571IPR017930Myb domain
SMARTSM007175.5E-132069IPR001005SANT/Myb domain
SuperFamilySSF466891.47E-2321114IPR009057Homeodomain-like
PfamPF002491.2E-142367IPR001005SANT/Myb domain
CDDcd001671.36E-132367No hitNo description
Gene3DG3DSA:1.10.10.601.8E-192375IPR009057Homeodomain-like
PROSITE profilePS500907.36468118IPR017877Myb-like domain
SMARTSM007178.4E-472120IPR001005SANT/Myb domain
PfamPF002495.8E-675117IPR001005SANT/Myb domain
CDDcd001672.73E-475117No hitNo description
Gene3DG3DSA:1.10.10.605.0E-976117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MATPPLPPPP RARCIVRLKL PPAWTPEEDA RLQRLAKENG FRRWSRVARS MPRRSARSCR  60
DRWRHHLARD VYHRPFTARD DDELLRLHYR LGDRWKEIGR AVYGRTSRVM KHRWRELRRG  120
GFLATAARKE QAALDMADDM VETSEVEEPA DQSLPSLELQ RSTLADTLAS SFGSCSLATD  180
HVMDPLAGSL ALGFACMAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-1724114797MYB PROTO-ONCOGENE PROTEIN
1h88_C7e-172411461151MYB PROTO-ONCOGENE PROTEIN
1h89_C7e-172411461151MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-1724114797C-Myb DNA-Binding Domain
1msf_C2e-1724114797C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA10G0057400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0927490.0AC092749.1 Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OSJNBb0023M11, from chromosome 10, complete sequence.
GenBankAC1235940.0AC123594.1 Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAb0078C13, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645964.11e-108transcription factor MYB73
TrEMBLI1QTP11e-141I1QTP1_ORYGL; Uncharacterized protein
STRINGORGLA10G0057400.11e-142(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125692035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.14e-19myb domain protein 70