PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA10G0047100.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 272aa    MW: 30750 Da    PI: 10.1389
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA10G0047100.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.58.5e-12561271895
                        --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                 B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                        lp + +++++g   ++k ltl +++++  +v+l  +k++++++++kGWk+Fv+  +L++g  v F++++ s+  l + 
  ORGLA10G0047100.1  56 LPPEIVARCNGH--NGKHLTLVTRNSKPVNVRL--EKRGQSFYISKGWKKFVELTDLRVGQCVRFSVSSPST--LDLL 127
                        677777788666..4568***************..*******************************654333..4444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.71E-1452132IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.4E-1355132IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.26356132IPR003340B3 DNA binding domain
PfamPF023625.5E-956124IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.6E-6178268IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.67E-10192269IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.161236272IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MVPDQDGELR HDVCSLSTSL RLTAHVTSSI VHEQSSNIRY GENRKHGQRY AYHEPLPPEI  60
VARCNGHNGK HLTLVTRNSK PVNVRLEKRG QSFYISKGWK KFVELTDLRV GQCVRFSVSS  120
PSTLDLLILD KHGTSLAIPP SKRDLKLKSK RSTHQDSKGH PSNTDPGPSR IINRRVTKSE  180
SSANTQLLVQ YFSKRYSIDH LEQLMTGRTE DIEVQTLVGP SVNMVLHTST DHRCNLKKGW  240
TDFALSNGIK LNTVCIFHFY KTTHLGVIVD IF
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA10G0047100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8332320.0CT833232.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA237C07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878103.15e-52B3 domain-containing protein Os10g0323000-like
SwissprotQ7XFU90.0Y1030_ORYSJ; B3 domain-containing protein Os10g0323000
TrEMBLI1QTD80.0I1QTD8_ORYGL; Uncharacterized protein
STRINGORGLA10G0047100.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1831033
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]