PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA10G0039000.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YC
Protein Properties Length: 335aa    MW: 37058.8 Da    PI: 5.5311
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA10G0039000.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC765.2e-2431129297
              NF-YC   2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 
                        +++fw      ie+++  ++  lP++r+k+i++a e   m+sa++P++++k celf+ el lr+w+ a++ +r+ +  +dia+a+t t+ + 
  ORGLA10G0039000.1  31 MEKFWRMSqeqIEESAGNQELILPISRVKNIIRAKEGGMMLSADTPAFVTKLCELFVQELILRAWVCANSHNREIILGTDIAEAITTTESYH 122
                        78899876122555555566679********************************************************************* PP

              NF-YC  91 flvdivp 97 
                        fl ++v 
  ORGLA10G0039000.1 123 FLANVVR 129
                        **99885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471139.89E-1747129IPR009072Histone-fold
PfamPF008085.5E-1053115IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.109.4E-2053128IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MPIPKKDGVE DNQEDDTFSR LQLLAQQRHA MEKFWRMSQE QIEESAGNQE LILPISRVKN  60
IIRAKEGGMM LSADTPAFVT KLCELFVQEL ILRAWVCANS HNREIILGTD IAEAITTTES  120
YHFLANVVRG HQALGSNIRE IGVSAWKRHK LDEMTSLCHP PQAVQVTDLA NHPPNIPVCP  180
PIGQSGTQHT TSTHVLMMQG ESLHKASKEK SPLNEVMVPT NKVGMTNSSY AVPNGGGATS  240
SKVAIDSQKG ETAQVFSSQH ACPSLEDNYV IPISAGHGDS FRTLDEANIP QLHQEQKNFI  300
SQDAIVGENI PLNESLEKSK HMDEDLLFPD KDLRE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B2e-1337128193NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA10G0039000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0972780.0AC097278.6 Oryza sativa chromosome 10 BAC OSJNBa0040E17 genomic sequence, complete sequence.
GenBankAK2889610.0AK288961.1 Oryza sativa Japonica Group cDNA, clone: J090084F09, full insert sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613386.10.0uncharacterized protein LOC4348238
TrEMBLI1QT570.0I1QT57_ORYGL; Uncharacterized protein
STRINGORGLA10G0039000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139681528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.25e-19nuclear factor Y, subunit C2