PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA10G0024000.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 566aa    MW: 63540.3 Da    PI: 7.6613
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA10G0024000.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR146.81e-14362448191
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkle.leHnHe 88 
                        kfY++YA ++GF+++ks+++k         r+ +C++egk+ ++ ++  +++ +r+++++gCka +k++ ++   + + +v++++ l+HnH+
  ORGLA10G0024000.1 362 KFYQTYACHAGFDIKKSHTHKA-------FREVCCTREGKHVSKVTD-GDRQWRRPSKKMGCKAYVKLRHNYddsKITSVVYDVVeLQHNHP 445
                        6****************99998.......7899**********9999.88899****************997532222334443259***** PP

               FAR1  89 lap 91 
                        l+p
  ORGLA10G0024000.1 446 LTP 448
                        986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF540016.48E-11221350No hitNo description
PfamPF031018.1E-10362448IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
CYVRVSLMRC KRTEYHTPQP LRHRLLNAKK IVIGRATCNS PAPKSIPTLV RTSSNIIITE  60
VADQPHPASD LSPDLTQRSP IPMDSAPIIS DEVSAQHSAP DTVVEPPAIE ASGVIGNVSG  120
ASTASQTEDA PRAVDQEQHR TELLAETNED TDDVNSTPWS QPKRFIQKPA RFVLPVVVGP  180
SIMPSDVSLS VQLRDFLLNN GGRMDRSVFI TTLIIYLCMK LMEIDSYVAY RNDVVNSFST  240
GNQTEGLFID AFSSILFKDD RRNRPDTFGK RIFFSTSVSI MVPVLHHDHW SLYAINIAHR  300
RVDIMDSNNY NLIGTLESDH HRALSKRIVK RLSDALHEGP SVPPHMVPTE CMAFPTYDDA  360
YKFYQTYACH AGFDIKKSHT HKAFREVCCT REGKHVSKVT DGDRQWRRPS KKMGCKAYVK  420
LRHNYDDSKI TSVVYDVVEL QHNHPLTPSP SAVKHMRAHK NRDDTVMQFV DTMQESHVPQ  480
SCIMGVLSDL HGGQENIPFT SRDVGGQEIF RAFLHEDTNG SCKQDVPTXP MQESSQCLEG  540
KCGXHQQVVG VFQRVHVAKH XVLLGR
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA10G0024000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0917240.0AC091724.3 Oryza sativa Japonica Group chromosome 10 clone OSJNBa0004E08, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLI1QSQ70.0I1QSQ7_ORYGL; Uncharacterized protein
STRINGORGLA10G0024000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP142547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80010.15e-11FAR1-related sequence 8