PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA09G0180000.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 407aa    MW: 44073 Da    PI: 8.7661
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA09G0180000.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.82e-32130186259
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        dDgynWrKYGqK vkg e+prsYY+Ct+ +Cpvkkkvers+ d+++++i Y+g+Hnh+
  ORGLA09G0180000.1 130 DDGYNWRKYGQKAVKGGEYPRSYYKCTHLSCPVKKKVERSS-DGQITQILYRGQHNHQ 186
                        8****************************************.***************8 PP
2WRKY104.55.8e-33296354159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC vkk++ers++dpk+v++tYeg+H h+
  ORGLA09G0180000.1 296 LDDGYRWRKYGQKVVKGNPHPRSYYKCTYQGCDVKKHIERSSQDPKAVITTYEGKHSHD 354
                        59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-29120188IPR003657WRKY domain
SuperFamilySSF1182904.05E-26124188IPR003657WRKY domain
PROSITE profilePS5081124.593124188IPR003657WRKY domain
SMARTSM007744.4E-34129187IPR003657WRKY domain
PfamPF031061.7E-24130186IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.5E-36283356IPR003657WRKY domain
SuperFamilySSF1182901.83E-29288356IPR003657WRKY domain
PROSITE profilePS5081137.172291356IPR003657WRKY domain
SMARTSM007741.0E-38296355IPR003657WRKY domain
PfamPF031061.3E-25297354IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MGYPAASAPA PPSPFPVPHG LSPTAFLGGS PGLFSPTGNF EMSHQQALAQ VTAEAVHSPY  60
SMINQSDFSL PFSSTTTSVL ASQHVNSSAN VSSPREIPTL PSHTDNSNIE STEVSHGFQT  120
TALTEDKPAD DGYNWRKYGQ KAVKGGEYPR SYYKCTHLSC PVKKKVERSS DGQITQILYR  180
GQHNHQRPPK RRSKDGGALL NEADVSPEKE DASTRSEQGS QDYSGKFKAS NDGGPSSSRR  240
GDRGEQISGS SDSNDQGEEE VKVEGGATSD GNANKRHVPA PAQRIIVQTT SEVDLLDDGY  300
RWRKYGQKVV KGNPHPRSYY KCTYQGCDVK KHIERSSQDP KAVITTYEGK HSHDVPAARN  360
SSHSSANANV SSSSNLPHKD RGQRSSRRDG LRNASSVSSL QLKEESG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-38115357578Probable WRKY transcription factor 4
2lex_A2e-38115357578Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186191RPPKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA09G0180000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1938020.0AF193802.2 Oryza sativa zinc finger transcription factor WRKY1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633314.10.0probable WRKY transcription factor 4 isoform X1
TrEMBLA0A0D3FKA40.0A0A0D3FKA4_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9Z9E80.0A0A0D9Z9E8_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0J1C40.0A0A0E0J1C4_ORYNI; Uncharacterized protein
TrEMBLI1PCN60.0I1PCN6_ORYGL; Uncharacterized protein
STRINGONIVA11G11410.10.0(Oryza nivara)
STRINGORGLA03G0213200.10.0(Oryza glaberrima)
STRINGORGLA09G0180000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.13e-95WRKY DNA-binding protein 4