PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA09G0176200.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 306aa    MW: 34808.5 Da    PI: 8.0801
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA09G0176200.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.00024155174120
                        EEETTTTEEESSHHHHHHHH CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                        + Cp C k+Fsr  nL+ H+
  ORGLA09G0176200.1 155 FACPVCCKTFSRYNNLQMHM 174
                        78*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.19E-5142177No hitNo description
Gene3DG3DSA:3.30.160.601.5E-6155174IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF138948.4E-4155177No hitNo description
PROSITE profilePS5015710.284155182IPR007087Zinc finger, C2H2
PROSITE patternPS000280157177IPR007087Zinc finger, C2H2
PROSITE profilePS501578.538259295IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MANPSKDHIF PNQRSLISQS SSPHNSLPKK EEIPLLSLLP SIHDHNKIHG CYKQEKEEEV  60
MEDVDISLQI GLPSPDPNSS VIDFAKSNPL GATATTSQEL DGDDDDDHKV EVEREEEEEE  120
ASDDLCLDYF SMGKLTKGKY WIPTPTQILI GPTHFACPVC CKTFSRYNNL QMHMWGHGSQ  180
YRRGPESLRG TQPAAMLRLP CFCCAAGCRN NVDHPRARPL KDFRTLQTHY KRKHCAKPFA  240
CRKCGKPLAV RGDWRTHEKN CGRRWHCACG SDFKHKRSLK DHIRAFGRDH RERPPPPPPH  300
PLLPLP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA09G0176200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0900540.0AC090054.2 Oryza sativa chromosome 9 clone PAC0645D04, complete sequence.
GenBankAP0065270.0AP006527.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0603H10.
GenBankAP0067270.0AP006727.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0645D04.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611093.10.0zinc finger protein WIP2
SwissprotQ8W0311e-103ZWIP5_ARATH; Zinc finger protein WIP5
TrEMBLA0A0D3H4M30.0A0A0D3H4M3_9ORYZ; Uncharacterized protein
TrEMBLI1QRT30.0I1QRT3_ORYGL; Uncharacterized protein
STRINGORGLA09G0176200.10.0(Oryza glaberrima)
STRINGOBART09G03640.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51220.11e-101WIP domain protein 5
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]