PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA09G0175100.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 492aa    MW: 51765.4 Da    PI: 6.6927
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA09G0175100.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM67.73.3e-21171528125
                NAM   8 hPtdeelvveyLkkkvegkklelee.........vikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratk..sgyW 83 
                        hPt++el++ yL++++  ++++ +          +i+++d y ++P dL +     +++ +++ wyfFs+ ++++++g+r+ ra++  +g W
  ORGLA09G0175100.1  17 HPTEQELISSYLHPRLLLTTTKPAAavaaggvpsFIHHADAYAADPADLTArhlpaRAADGSRAWYFFSPVRTTTERGTRRARAVEsgDGCW 108
                        9**************88877333234566777768**************84466666666888********************87744788* PP

                NAM  84 katgkdkevlskkgelvglkktLvfykgrapkge..ktdWvmhe 125
                        ++    ++v+++ g+ vg ++ + f k+r+++g+  +t W+m e
  ORGLA09G0175100.1 109 HSESGVRAVVDAAGRRVGHRQFFSFVKKREEDGKrvRTGWLMVE 152
                        **************************99999887558*****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100528.56310176IPR003441NAC domain
SuperFamilySSF1019411.31E-3017176IPR003441NAC domain
PfamPF023656.7E-1217152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MADADADACP AVFASRHPTE QELISSYLHP RLLLTTTKPA AAVAAGGVPS FIHHADAYAA  60
DPADLTARHL PARAADGSRA WYFFSPVRTT TERGTRRARA VESGDGCWHS ESGVRAVVDA  120
AGRRVGHRQF FSFVKKREED GKRVRTGWLM VELGVDNDAA SASSSNELVL CKIYMTPRMP  180
PPSPPSAVTS SAAATMELMP RAPPPSAPSA VTSPAATTME LMAGGVHKRR KISDEIAAAA  240
TPPHPQQQRR QRCVPDNDGS KESSGESSSV VILDDDDDDA DAPEDGGAVR SKLRSDDGVM  300
LADARDDEQH AATSDSMAGT SGGAVTGGGH GKLLPDLNVV ATVAHDDEGR HARGAPRPQD  360
GGTSTTTTMV AGAGAERGST AGYLPAAATG YRRTLMLFLE EDDDAVEDEQ QQQAPPLPPA  420
TSTATTTRTA AEANVQRQRQ PPCCTFVVHP CAAHAKMRHG AAYGCGCRVT GAVRRGGYHL  480
PRRAVHTTTT TT
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA09G0175100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0058390.0AP005839.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBa0044K01.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611524.10.0PH domain leucine-rich repeat protein phosphatase 1
TrEMBLI1QRS20.0I1QRS2_ORYGL; Uncharacterized protein
STRINGORGLA09G0175100.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1745799