PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA09G0169200.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 537aa    MW: 56941.9 Da    PI: 9.6658
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA09G0169200.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.36.5e-066587123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       y+C++C++ F r  nL+ H r+H
  ORGLA09G0169200.1 65 YVCEICNQGFQRDQNLQMHRRRH 87
                       9*********************9 PP
2zf-C2H211.70.00082144165223
                        EETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                         C+ C+k +  +s++k H++t+
  ORGLA09G0169200.1 144 ACSRCSKAYAVHSDYKAHLKTC 165
                        6*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.46E-56487No hitNo description
Gene3DG3DSA:3.30.160.602.3E-56487IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.976587IPR007087Zinc finger, C2H2
SMARTSM003550.00526587IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806787IPR007087Zinc finger, C2H2
SMARTSM00355100107137IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.3E-4134164IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.46E-5138163No hitNo description
SMARTSM00355130143170IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MLSSCAPTAV PPQDVSGAAT EPFRSLQIAT AGAAAKKKRR PAGTPDPDAE VVSLSPRTLL  60
ESDRYVCEIC NQGFQRDQNL QMHRRRHKVP WKLLKREAGE AARKRVFVCP EPTCLHHDPS  120
HALGDLVGIK KHFRRKHSGH RQWACSRCSK AYAVHSDYKA HLKTCGTRGH TCDCGRVFSR  180
VESFIEHQDA CSAGRPRAAE ASSSPGRGGG VVVGAPAAAS SSQQQQQQQL FAVPASLSRT  240
ASSASPSSDL VVSPVAWPAT GGGGPAMASP RAAAPAPAGG SIAAFHHRFT DPALSPPTPC  300
GGRRGGCHTT HSLELQLMPP RTTTTCAGGS LGGTPVATAV GYYASSSPHS PAAALPSRQP  360
VADAMRLQLS IGFGGARDDG NNNSSSSSGE VLSASATRLK EAAHEQLRLA MAEKAAADEA  420
RAQAKRQAEL ADQELATARR MRHQAQVELS RAHALRDHAI RQVDATQLQI TCYSCRHKFR  480
ARAAAMISSD VASYVSSVVT EGGDAEVDND GNLHRRRLNA DDGMPRSHSR TMAMDLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-17139203367Zinc finger protein JACKDAW
5b3h_F2e-17139203367Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13539KKKRR
23540KKKRRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA09G0169200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1067960.0AK106796.1 Oryza sativa Japonica Group cDNA clone:002-116-B04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649378.10.0protein SHOOT GRAVITROPISM 5
TrEMBLI1QRL30.0I1QRL3_ORYGL; Uncharacterized protein
STRINGORGLA09G0169200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105138124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.16e-97indeterminate(ID)-domain 14