PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA09G0168800.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 195aa    MW: 21182.9 Da    PI: 7.4153
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA09G0168800.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.52e-15955148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       + +WT+eEde l +av+++   +W+ Ia  ++ +R +k+c++rw ++l
  ORGLA09G0168800.1  9 KTPWTQEEDEALRRAVREHRRQNWAEIALALP-RRGPKSCRLRWCQHL 55
                       579*****************************.***********9986 PP
2Myb_DNA-binding47.34.9e-1563104346
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         +T+eEd +++   + +G++ W+tIar+++ gR+++ +k+rw++
  ORGLA09G0168800.1  63 VFTAEEDAIILAQQRVHGNK-WATIARCLP-GRSDNAVKNRWNS 104
                        59******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.696459IPR017930Myb domain
SuperFamilySSF466896.78E-288102IPR009057Homeodomain-like
SMARTSM007172.4E-15857IPR001005SANT/Myb domain
PfamPF002491.1E-14955IPR001005SANT/Myb domain
CDDcd001671.11E-131155No hitNo description
Gene3DG3DSA:1.10.10.601.1E-211162IPR009057Homeodomain-like
SMARTSM007171.8E-1260108IPR001005SANT/Myb domain
PROSITE profilePS5129416.83262110IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-1963108IPR009057Homeodomain-like
PfamPF002499.2E-1263104IPR001005SANT/Myb domain
CDDcd001676.96E-1064103No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MAADGGGRKT PWTQEEDEAL RRAVREHRRQ NWAEIALALP RRGPKSCRLR WCQHLSPELD  60
SRVFTAEEDA IILAQQRVHG NKWATIARCL PGRSDNAVKN RWNSALRKLL QGQHARGAGS  120
PPAAAAAAAG DDRDDAPVCL QLFPARAGGV KEAGLFAGEK DVEEEDVATS LTLGLPVLCE  180
AELELRLGPA WPATA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3zqc_A2e-2791102103MYB3
3zqc_D2e-2791102103MYB3
3zqc_G2e-2791102103MYB3
3zqc_J2e-2791102103MYB3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in auxin response. Functions in auxin signal transduction and modulates lateral root growth. Interacts with ARF response factors to promote auxin-responsive gene expression (PubMed:17675404). In response to auxin, binds sequence-specific motifs in the promoter of the auxin-responsive gene IAA19, and activates IAA19 transcription. The IAA19 transcription activation by MYB77 is enhanced by direct interaction between MYB77 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:17675404, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA09G0168800.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin (PubMed:17675404). Down-regulated by potassium deprivation (PubMed:15173595). {ECO:0000269|PubMed:15173595, ECO:0000269|PubMed:17675404}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649306.11e-111transcription factor MYB77
SwissprotQ9SN129e-35MYB77_ARATH; Transcription factor MYB77
TrEMBLI1QJ581e-136I1QJ58_ORYGL; Uncharacterized protein
STRINGORGLA08G0145900.11e-137(Oryza glaberrima)
STRINGORGLA09G0168800.11e-137(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49603465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.15e-37myb domain protein 77
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]