PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA09G0165100.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 543aa MW: 59774.9 Da PI: 5.5194

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA09G0165100.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.00052	27	48	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC++C++ F ++ n++rH r+H ORGLA09G0165100.1 27 KCTKCPREFCSSINYRRHTRVH 48 7*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.286	26	48	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	28	48	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 543 aa Download sequence Send to blast
MPNVRSSPVA DLPGWPLFSP PKLQLQKCTK CPREFCSSIN YRRHTRVHRR TLQIEKDFLK 60 NRDNIAAFWD KLTLDQAKTI LSLADVDIEG VTGPSILAAL STWMCKPGYA SLPLPYARAG 120 NQLLDLIETT ASRLPVSSNE LFSMLDEASE NTFLSTNPTA CIQKFIFNGE ADKVAPELKN 180 AVACTSYMLE QKLVEAWSAD KAAEALRCQK LLVEEEEAAQ KRQAELIERK RMKKLRQKEQ 240 RLKDLKDEDV TDRFPGSVDG TTDSSGILSL KEATSDPGLY EQEDAQLPTP VASEDNSSFA 300 DLPVEHDIQD PGHEVNPSVT LNQQVFSRHR VGRTENFAQN SFASGGSAIG SKHPASVRHS 360 HYRGANAGAV SNRNKTWTWK VRTEIEEHSP KDELNIDDGQ EIVLNKKSRV LIGSISVAIE 420 DGNECLEDNQ YSKEYPTPAS QLNIGNHPVT KVMQPFNHGE EGNGYNAHND VEVSITPTAQ 480 DHSSSGVMTD GNNCSSCCNA GLAEGGGLRG AIFSSKEAAA FLSQRWKEAI NADHVKLVLC 540 PEG

Sequence ? help Back to Top

Protein Sequence Length: 543 aa Download sequence Send to blast

MPNVRSSPVA DLPGWPLFSP PKLQLQKCTK CPREFCSSIN YRRHTRVHRR TLQIEKDFLK  60
NRDNIAAFWD KLTLDQAKTI LSLADVDIEG VTGPSILAAL STWMCKPGYA SLPLPYARAG  120
NQLLDLIETT ASRLPVSSNE LFSMLDEASE NTFLSTNPTA CIQKFIFNGE ADKVAPELKN  180
AVACTSYMLE QKLVEAWSAD KAAEALRCQK LLVEEEEAAQ KRQAELIERK RMKKLRQKEQ  240
RLKDLKDEDV TDRFPGSVDG TTDSSGILSL KEATSDPGLY EQEDAQLPTP VASEDNSSFA  300
DLPVEHDIQD PGHEVNPSVT LNQQVFSRHR VGRTENFAQN SFASGGSAIG SKHPASVRHS  360
HYRGANAGAV SNRNKTWTWK VRTEIEEHSP KDELNIDDGQ EIVLNKKSRV LIGSISVAIE  420
DGNECLEDNQ YSKEYPTPAS QLNIGNHPVT KVMQPFNHGE EGNGYNAHND VEVSITPTAQ  480
DHSSSGVMTD GNNCSSCCNA GLAEGGGLRG AIFSSKEAAA FLSQRWKEAI NADHVKLVLC  540
PEG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	227	234	ERKRMKKL
2	232	242	KKLRQKEQRLK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA09G0165100.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK102035	0.0	AK102035.1 Oryza sativa Japonica Group cDNA clone:J033081C08, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015611822.1	0.0	uncharacterized protein LOC4347911
Refseq	XP_015611823.1	0.0	uncharacterized protein LOC4347911
TrEMBL	A0A0D3HA95	0.0	A0A0D3HA95_9ORYZ; Uncharacterized protein
TrEMBL	I1QRH2	0.0	I1QRH2_ORYGL; Uncharacterized protein
STRING	ORGLA09G0165100.1	0.0	(Oryza glaberrima)
STRING	OBART09G20240.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8503	24	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	1e-85	C2H2-like zinc finger protein