PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA09G0163000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NF-YB | ||||||||
Protein Properties | Length: 168aa MW: 18291.3 Da PI: 4.7611 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 54.4 | 3.1e-17 | 35 | 130 | 6 | 95 |
NF-YB 6 rflPianvsrimkkvlPanak......iskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 ++lP a v r++k+ l + a + kda e + fi ++++ a+d c++ kr+tin+dd+l al ++ f ++vepl++ l+++r ORGLA09G0163000.1 35 EELPKAIVRRLVKEKLAQVAAggaeviVNKDAMSAFAESARIFIHYLSATANDMCKESKRQTINADDVLKALDEMEFPEFVEPLNTSLQEFR 126 679**********99976543222333899************************************************************** PP NF-YB 92 eleg 95 + ++ ORGLA09G0163000.1 127 NKNA 130 9776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 3.4E-32 | 30 | 165 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.4E-11 | 36 | 106 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 9.84E-27 | 37 | 162 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MAGETGEGGG SHSQPEKQPG QAAAAAASMA EAEVEELPKA IVRRLVKEKL AQVAAGGAEV 60 IVNKDAMSAF AESARIFIHY LSATANDMCK ESKRQTINAD DVLKALDEME FPEFVEPLNT 120 SLQEFRNKNA ARRSETTQKK AEKRRKIDKE SLPQEQNDAA DNGKTDED |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA09G0163000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK242634 | 0.0 | AK242634.1 Oryza sativa Japonica Group cDNA, clone: J090023D18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015611896.1 | 1e-106 | DNA polymerase epsilon subunit 3 | ||||
TrEMBL | A0A0D3HA76 | 1e-118 | A0A0D3HA76_9ORYZ; Uncharacterized protein | ||||
TrEMBL | I1QRF1 | 1e-118 | I1QRF1_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA09G0163000.1 | 1e-119 | (Oryza glaberrima) | ||||
STRING | OBART09G20070.1 | 1e-119 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10414 | 37 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27470.1 | 2e-35 | nuclear factor Y, subunit B11 |