PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA09G0153800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 535aa MW: 54820.9 Da PI: 9.4147 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.4 | 1.3e-05 | 76 | 98 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H ORGLA09G0153800.1 76 FVCEVCNKGFQREQNLQLHRRGH 98 89*******************88 PP | |||||||
2 | zf-C2H2 | 12.5 | 0.00043 | 152 | 174 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+k++ +s+ k H +t+ ORGLA09G0153800.1 152 WRCDKCSKRYAVQSDWKAHSKTC 174 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 9.04E-7 | 75 | 98 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 7.3E-6 | 75 | 98 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF12171 | 3.4E-5 | 76 | 98 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 11.094 | 76 | 98 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0041 | 76 | 98 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 78 | 98 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.0E-4 | 140 | 173 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 9.04E-7 | 147 | 172 | No hit | No description |
SMART | SM00355 | 150 | 152 | 172 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 535 aa Download sequence Send to blast |
MAAASSAPFF GLGDTQMPPP QNPTNPALHH HPNPSPAPVA AAAPAPKKKR NQPGNPNPDA 60 EVIALSPRTL MATNRFVCEV CNKGFQREQN LQLHRRGHNL PWKLKQKNPK EARRRVYLCP 120 EPSCVHHDPS RALGDLTGIK KHYCRKHGEK KWRCDKCSKR YAVQSDWKAH SKTCGTREYR 180 CDCGTLFSRR DSFITHRAFC DALAQENARM PPIGAGVYGG AGNMALGLTG MAAPQLPAGF 240 PDQAGQPSAS AGDVLRLGGG SNGASQFDHL MASSSGSSMF RSQGSSSSSF YLANGAAHHA 300 PAQDFGPEDG QSQAGQGSLL HGKPAAFHDL MQLPVQHQQS GNGNLLNLGF FSGSNGGVDQ 360 FNGGAGNGGQ GSIVTSSGLA GNHGGGGGGF PSLYNSSEPG GTLPQMSATA LLQKAAQMGA 420 TTSSYNAGGA GGASSLLRGA SSHGISAGEG PANERSSYQN LIMGSMASGG GGAGFAGSFS 480 GASGFGGAVD DGKLSTRDFL GVGVVQGISG SAAMGPPRHG AAGLHVGSLD PANMN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-35 | 148 | 210 | 3 | 65 | Zinc finger protein JACKDAW |
5b3h_F | 2e-35 | 148 | 210 | 3 | 65 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00255 | DAP | Transfer from AT2G02070 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA09G0153800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK101181 | 0.0 | AK101181.1 Oryza sativa Japonica Group cDNA clone:J033029F02, full insert sequence. | |||
GenBank | AK101950 | 0.0 | AK101950.1 Oryza sativa Japonica Group cDNA clone:J033075E02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015612461.1 | 0.0 | protein indeterminate-domain 5, chloroplastic | ||||
Refseq | XP_015612462.1 | 0.0 | protein indeterminate-domain 5, chloroplastic | ||||
Refseq | XP_015612463.1 | 0.0 | protein indeterminate-domain 5, chloroplastic | ||||
Refseq | XP_015612465.1 | 0.0 | protein indeterminate-domain 5, chloroplastic | ||||
Refseq | XP_015612466.1 | 0.0 | protein indeterminate-domain 5, chloroplastic | ||||
Swissprot | Q9ZUL3 | 1e-123 | IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic | ||||
TrEMBL | I1QR59 | 0.0 | I1QR59_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA09G0153800.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1733 | 37 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14580.2 | 1e-113 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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