PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA09G0151700.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 369aa    MW: 42074.9 Da    PI: 9.5604
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA09G0151700.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM175.12e-541172461128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                        lppGfrFhPtdeelv++yLk+k++g k+el ++i+evd+yk+ePw+L  k  + +++ ewyfF +rd+ky++g r+nrat++gyWk+tgkd+
  ORGLA09G0151700.1 117 LPPGFRFHPTDEELVNYYLKRKIHGLKIEL-DIIPEVDLYKCEPWELAeKsFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDR 207
                        79****************************.99**************84335556888********************************** PP

                NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +v+++ +g+++g+kktLv+y+grap+g++tdWvmheyrl
  ORGLA09G0151700.1 208 RVVHQhGGRAIGMKKTLVYYRGRAPQGVRTDWVMHEYRL 246
                        **99978899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-64111269IPR003441NAC domain
PROSITE profilePS5100560.881117269IPR003441NAC domain
PfamPF023651.7E-29118246IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
WKRFKLLVRV IRESAKEEPK VAIRSTKILW EGXLCRPVSL LLCLLPQHXL PXKTYLXGWW  60
QQQLGKASAA AQKKQGVFGQ SCRRRRRRRR RPASSRRGRR RRIGGHRHRR LMAPVGLPPG  120
FRFHPTDEEL VNYYLKRKIH GLKIELDIIP EVDLYKCEPW ELAEKSFLPS RDPEWYFFGP  180
RDRKYPNGFR TNRATRAGYW KSTGKDRRVV HQHGGRAIGM KKTLVYYRGR APQGVRTDWV  240
MHEYRLDDKD CEDTMPIQDT YALCRVFKKN AICTEVEELQ GQCSMALLEG ACQQLLASGG  300
GGSQEQYETP SPPDVPVGST SGGADADAEA EDDPDKDDSW MQFISDDAWC SSTADGGAEE  360
STSCVALAG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-521032691168Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18290RRRRRRRRR
28390RRRRRRRR
38490RRRRRRR
484101RRRRRRRPASSRRGRRRR
587101RRRRPASSRRGRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00363DAPTransfer from AT3G17730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA09G0151700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612702.21e-178NAC domain-containing protein 86
TrEMBLI1QR380.0I1QR38_ORYGL; Uncharacterized protein
STRINGORGLA09G0151700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37133879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.11e-114NAC domain containing protein 57