PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA09G0128800.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 379aa MW: 40534.3 Da PI: 6.6549

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA09G0128800.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.9	1.4e-10	182	240	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l l+ + l++e+ ORGLA09G0128800.1 182 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATTLSAQLALLQRDTSGLTTEN 240 9*********************************************9999888888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.1E-16	178	242	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.898	180	243	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.5E-9	182	240	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.2E-10	182	233	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.7E-10	182	237	No hit	No description
CDD	cd14703	5.33E-23	183	232	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MNREKSPIPG DGGDGLPPQA TRRAGPPAAA AAEYDISRMP DFPTRNPGHR RAHSEILSLP 60 EDLDLCAAGG GDGPSLSDEN DEELFSMFLD VEKLNSTCGA SSEAEGESSS AGAAAAAAAA 120 AAAAAHGARP KHQHSLSMDE SMSIKAEELV GASPGTEGMS SAEAKKAVSA AKLAELALVD 180 PKRAKRIWAN RQSAARSKER KMRYIAELER KVQTLQTEAT TLSAQLALLQ RDTSGLTTEN 240 SELKLRLQTM EQQVHLQDAL NDTLKSEVQR LKVATGQMAN GGGMMMNFGG MPHQFGGNQQ 300 MFQNNQAMQS MLAAHQLQQL QLHPQAQQQQ VLHPQHQQQQ PLHPLQAQQL QQAARDLKMK 360 SPMGGQSQWG DGKSGSSGN

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MNREKSPIPG DGGDGLPPQA TRRAGPPAAA AAEYDISRMP DFPTRNPGHR RAHSEILSLP  60
EDLDLCAAGG GDGPSLSDEN DEELFSMFLD VEKLNSTCGA SSEAEGESSS AGAAAAAAAA  120
AAAAAHGARP KHQHSLSMDE SMSIKAEELV GASPGTEGMS SAEAKKAVSA AKLAELALVD  180
PKRAKRIWAN RQSAARSKER KMRYIAELER KVQTLQTEAT TLSAQLALLQ RDTSGLTTEN  240
SELKLRLQTM EQQVHLQDAL NDTLKSEVQR LKVATGQMAN GGGMMMNFGG MPHQFGGNQQ  300
MFQNNQAMQS MLAAHQLQQL QLHPQAQQQQ VLHPQHQQQQ PLHPLQAQQL QQAARDLKMK  360
SPMGGQSQWG DGKSGSSGN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:11390974, ECO:0000269\|PubMed:12855676, ECO:0000269\|PubMed:14704272, ECO:0000269\|PubMed:9311985}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00126	DAP	Transfer from AT1G06070	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA09G0128800.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK102795	0.0	AK102795.1 Oryza sativa Japonica Group cDNA clone:J033108B13, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015612692.1	0.0	transcription factor RF2a
Swissprot	Q69IL4	0.0	RF2A_ORYSJ; Transcription factor RF2a
TrEMBL	A0A0D3H8X8	0.0	A0A0D3H8X8_9ORYZ; Uncharacterized protein
TrEMBL	I1QQF9	0.0	I1QQF9_ORYGL; Uncharacterized protein
STRING	ORGLA09G0128800.1	0.0	(Oryza glaberrima)
STRING	OBART09G16440.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4269	38	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	2e-64	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064] Ordiz MI,Yang J,Barbazuk WB,Beachy RN Functional analysis of the activation domain of RF2a, a rice transcription factor. Plant Biotechnol. J., 2010. 8(7): p. 835-44 [PMID:20408988]