PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA09G0111700.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 290aa    MW: 30952.6 Da    PI: 7.2659
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA09G0111700.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.0013119134116
                        EEETTTTEEESSHHHH CS
            zf-C2H2   1 ykCpdCgksFsrksnL 16 
                        ++Cp C k+F+r  n+
  ORGLA09G0111700.1 119 FSCPVCFKTFNRYNNM 134
                        89********998776 PP
2zf-C2H213.20.00027207227323
                        ETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                        C +Cgk F  k + ++H +++
  ORGLA09G0111700.1 207 CRKCGKAFAVKGDWRTHEKNC 227
                        *****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.3E-4119135IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.61E-6187225No hitNo description
Gene3DG3DSA:3.30.160.602.1E-5191225IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.621205225IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MDVEGSGSGC CAAEAAAAGD DDADVTVALH IGLPSPTAAA DLISGLSSAA GRRSSTARRD  60
EEEDEAEEAG GASRDDGDGG DAADAAAPLG FASTPIGRLN KGQYWIPTPS QILIGPTQFS  120
CPVCFKTFNR YNNMQMQMHM WGHGSQYRKG PESLRGIQPT AMLRLPCYCC AAGCRNNIDH  180
PRAKPLKDFR TLQTHYKRKH GLKPFLCRKC GKAFAVKGDW RTHEKNCGKL WYCLCGSEFK  240
HKRSLKDHAR AFGHGHGALG GAAALDDDDD GAVSDLDHDS SSTAPAARSL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA09G0111700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6269400.0EF626940.1 Oryza sativa (indica cultivar-group) WIP4 (WIP4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611033.11e-158zinc finger protein WIP2
SwissprotQ9SVY11e-123ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLI1QPY80.0I1QPY8_ORYGL; Uncharacterized protein
STRINGORGLA09G0111700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-107C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]