PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA09G0084000.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 171aa    MW: 18391.1 Da    PI: 8.4732
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA09G0084000.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.4e-0578100123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C++C+k F ++  L  H++ H
  ORGLA09G0084000.1  78 FTCTYCDKKFYSSQALGGHQNAH 100
                        89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.64E-768119No hitNo description
PROSITE profilePS5015711.38578105IPR007087Zinc finger, C2H2
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MLTTFSAFSQ EGRGVAATSG GGGPFTGWCS SRRRRPEAPA AMDRYNGGGG GGGEEGDEQL  60
DLNLSLQPSQ ANEPPGYFTC TYCDKKFYSS QALGGHQNAH KFERSVAKRT RELAAARRQQ  120
AADEEARRGA GTTTTREPTG NASSLYQRAS PPAEARRRDL LTDDIDLSLK L
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA09G0084000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8358190.0CT835819.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA017B14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611311.11e-104zinc finger protein 2
TrEMBLI1QP611e-121I1QP61_ORYGL; Uncharacterized protein
STRINGORGLA09G0084000.11e-122(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.11e-14zinc finger protein 2