PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA09G0083700.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 374aa    MW: 40016.6 Da    PI: 6.8393
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA09G0083700.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding452.5e-141462148
                       TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                       +g+W +eEd  l  +v  +G+g +W + ++++g++R++k+c++rw++yl
  ORGLA09G0083700.1 14 KGPWAPEEDAALRAYVDAHGTGgNWIALPHKIGLNRCGKSCRLRWLNYL 62
                       79*********************************************97 PP
2Myb_DNA-binding39.61.2e-1269111246
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        g +T++Ed l+  +    G++ W+tIa+ ++ gRt++++k++w++
  ORGLA09G0083700.1  69 GGFTEDEDRLICSLYIAIGSR-WATIAAQLP-GRTDNDIKNYWNS 111
                        569******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.954962IPR017930Myb domain
SuperFamilySSF466896.84E-2612109IPR009057Homeodomain-like
SMARTSM007171.1E-101364IPR001005SANT/Myb domain
PfamPF002493.5E-131462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-221569IPR009057Homeodomain-like
CDDcd001671.51E-71662No hitNo description
PROSITE profilePS5129420.43263117IPR017930Myb domain
SMARTSM007176.7E-1167115IPR001005SANT/Myb domain
PfamPF002496.2E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-2170117IPR009057Homeodomain-like
CDDcd001674.82E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MGRAPCCDKA TVKKGPWAPE EDAALRAYVD AHGTGGNWIA LPHKIGLNRC GKSCRLRWLN  60
YLRPNIRHGG FTEDEDRLIC SLYIAIGSRW ATIAAQLPGR TDNDIKNYWN SKLKRRLLGG  120
GRRPRGAPPR LVLSGPGPAV TAATSRNAMA ASAIERMQLS VRLRRLEAAA PPPPQPFTFY  180
GSNNLAAPPW QPPISPAASG SSEMPRRLHH HHPSGAAATS SYSGLISSWS SSRSHIIHDA  240
WLDASSTPPL STTSMGDAAT TTTTTAGGES SSSTPTVSTA TTPFIGGSID MEDEIDMLLQ  300
QIRCFDENGD DDNDQRLIVG DEAAAGAENY LRALIDEAAA NGCDVGVGSW SSCSTPGVDS  360
VFHEYAQLDY GQYN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA09G0083700.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0056860.0AP005686.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBa0016E03.
GenBankAP0057470.0AP005747.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBa0039E17.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610955.10.0transcription factor MYB36
SwissprotQ9FKL26e-77MYB36_ARATH; Transcription factor MYB36
TrEMBLI1QP580.0I1QP58_ORYGL; Uncharacterized protein
STRINGORGLA09G0083700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132652632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.15e-70myb domain protein 36
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]