PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA09G0034800.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

G2-like

Protein Properties

Length: 250aa MW: 27133.4 Da PI: 10.1113

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA09G0034800.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	38.4	2.8e-12	62	87	30	55
G2-like 30 ktilelmkvkgLtlehvkSHLQkYRl 55 ktil++m+vkgLtl h+kSHLQkYRl ORGLA09G0034800.1 62 KTILRTMGVKGLTLFHLKSHLQKYRL 87 99***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.7E-12	59	88	IPR009057	Homeodomain-like
Pfam	PF14379	1.2E-21	128	173	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
CSRLGXSTTG RTAARRGVRR GEGPAWCXPP IPSPASGGRP TSTSASSTPS PSSAAPRKQH 60 LKTILRTMGV KGLTLFHLKS HLQKYRLGKQ SGKEASEQSK DASYLLDAQG GMSVSPRVST 120 QDVKENQEVK EALRAQMEMQ RRLHEQVEVQ KHVQIRMEAY QKYIDTLLEK ACKIVSEQLA 180 SSGFSISDND LPELSGGVMC GSADTLSSSI FHQLSVSPIN LHSPEGKPTP SGIEGQMILQ 240 KSPELKRKSC

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA09G0034800.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK069336	0.0	AK069336.1 Oryza sativa Japonica Group cDNA clone:J023010K22, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015611986.1	1e-134	protein PHR1-LIKE 2
Swissprot	Q94A57	5e-43	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	I1QMR9	0.0	I1QMR9_ORYGL; Uncharacterized protein
STRING	ORGLA09G0034800.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3427	38	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	1e-44	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]