PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA09G0014500.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CO-like
Protein Properties Length: 328aa    MW: 35466.6 Da    PI: 6.3968
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA09G0014500.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box25.72.3e-081356441
           zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41
                       ++C+ + + +  ++C  ++  lC++C    H +       H++vp
  ORGLA09G0014500.1 13 QRCDSCRSAPCAFYCLADSAALCATCDADVH-SvnplarrHRRVP 56
                       79*****************************.4478888899887 PP
2CCT69.11.1e-23261304144
                CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                        Rea++ RY+eKrktR+FeK+irY+sRKa+Ae+RpR+KGrF+k++
  ORGLA09G0014500.1 261 REARVHRYREKRKTRRFEKTIRYASRKAYAETRPRIKGRFAKRS 304
                        9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.2E-141057IPR000315B-box-type zinc finger
PfamPF006432.1E-61356IPR000315B-box-type zinc finger
CDDcd000212.76E-111457No hitNo description
PROSITE profilePS5011911.0211557IPR000315B-box-type zinc finger
PfamPF062031.5E-17261303IPR010402CCT domain
PROSITE profilePS5101716.797261303IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MLKLEPEFPG LPQRCDSCRS APCAFYCLAD SAALCATCDA DVHSVNPLAR RHRRVPMGVV  60
AAPGAGGAFV VRPAGGVNSS WPIREGRRCY YDGEEDEEAT SWLLFDPLKD SSDQGLPPFG  120
DALVADFLNL GGGAGEKEDA SSSKDCSSSH GKSSEGSHEF AVPGEPVPER QGFGAVSMDI  180
TDYDASNFRR GYSFGASLGH SVSMSSLENM STVPDCGVPD ITTSYLRPSK STIDLFTAAA  240
GSPVAAHSIM SPPQFMGAID REARVHRYRE KRKTRRFEKT IRYASRKAYA ETRPRIKGRF  300
AKRSDTDLEV DQYFSTTADS SCGVVPTF
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under short day (SD) conditions. Functions as repressor of flowering under SD conditions, independently of HD1, EHD1, MADS50 and MADS51. Controls flowering time under SD conditions by negatively regulating the expression of HD3A and FTL. {ECO:0000269|PubMed:18449564}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA09G0014500.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases after the beginning of the dark period, peaks at dawn, stays high four hours and gradually decreases until sunset. {ECO:0000269|PubMed:18449564}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0018870.0AB001887.1 Oryza sativa Japonica Group cDNA for zinc finger protein, complete cds, clone:S12569.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612389.10.0zinc finger protein CO3-like
SwissprotO821170.0CO3_ORYSJ; Zinc finger protein CO3
TrEMBLI1QM660.0I1QM66_ORYGL; Uncharacterized protein
STRINGORGLA09G0014500.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1435899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.16e-33CONSTANS-like 2