PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA09G0008900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 416aa MW: 44941.8 Da PI: 9.8573 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.5 | 5.1e-05 | 309 | 331 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C +Cg++Fs+ L H+++H ORGLA09G0008900.1 309 YECRKCGTMFSSGQALGGHMKSH 331 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.87E-6 | 306 | 335 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.3E-4 | 308 | 332 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 2.9E-8 | 309 | 331 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.635 | 309 | 336 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 311 | 331 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 416 aa Download sequence Send to blast |
MAPSRISSSE SERPVGSYRF HIPRQPPRIQ AEGGKRHMII GDRRHGGTAL WRRGSMLPPS 60 LPRWGVQDGH GHVDGSSRQH PSELGSSSAL SVLIGGWIWR SAAAQAHGEV IDGGRCEDEA 120 GDHMQPPPAS SASMAMLSEE RISASGIVVR ERQLHGYGER PFLPCLATMA AKGTAREIST 180 KKIAKKDHGE VGDLTMAMLM PSWTSTGNHS SRNPTRCLEQ LPEPSKRAHS EAYGNMQLAT 240 GDLIVGLHKQ ATITVPPPNI SEIGGHLTAH KNNEMTVGKR VQHIIDVSVA KEATRSLVSS 300 ARQSRRGPYE CRKCGTMFSS GQALGGHMKS HNSDERWGDK RVPSAFVGSF LSLITPIDVS 360 NVSVPSSRNP HTSSIPNKEE GRVLVMGAAP LNSVPKGSFR LFGENIAEAP KEEPME |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA09G0008900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK242186 | 0.0 | AK242186.1 Oryza sativa Japonica Group cDNA, clone: J075161K18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015611340.1 | 0.0 | uncharacterized protein LOC4346425 | ||||
TrEMBL | I1QM10 | 0.0 | I1QM10_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA09G0008900.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16216 | 12 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04390.1 | 3e-07 | C2H2 family protein |