PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA08G0229900.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 183aa    MW: 20745.8 Da    PI: 9.9991
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA08G0229900.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.14.1e-271766251
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       rie+ + rqv fskRr g++KKA+ELSvLCda+va+++fs+ g+lye++s
  ORGLA08G0229900.1 17 RIEDRTSRQVRFSKRRSGLFKKAYELSVLCDAQVALLVFSPAGRLYEFAS 66
                       8***********************************************86 PP
2K-box172.5e-071281704385
              K-box  43 LesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 
                        +++L++ eL+ Le+++ ++l+ +++k +  + + + ++ kk k
  ORGLA08G0229900.1 128 VNELNIAELRGLEEAMTNALTVVKNKLMMKVASVLPQSEKKRK 170
                        799********************99988777777777766665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.5E-35867IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.291868IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.19E-291086IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-281030IPR002100Transcription factor, MADS-box
CDDcd002658.45E-321378No hitNo description
PfamPF003193.0E-261764IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-283045IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-284566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MEGGGRRRKR GKVELRRIED RTSRQVRFSK RRSGLFKKAY ELSVLCDAQV ALLVFSPAGR  60
LYEFASSTSS IDTIFGRYWD LLDTTIDLNI EARESRVDCN IQLRQKEHSD DPVPKINHIT  120
QCVLESNVNE LNIAELRGLE EAMTNALTVV KNKLMMKVAS VLPQSEKKRK SCSISEPRSG  180
VSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A8e-1810108393MEF2 CHIMERA
6byy_B8e-1810108393MEF2 CHIMERA
6byy_C8e-1810108393MEF2 CHIMERA
6byy_D8e-1810108393MEF2 CHIMERA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1512RRRKRGKV
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA08G0229900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2429800.0AK242980.1 Oryza sativa Japonica Group cDNA, clone: J090094F15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649438.11e-131MADS-box transcription factor 51-like isoform X2
TrEMBLI1QLJ81e-131I1QLJ8_ORYGL; Uncharacterized protein
STRINGORGLA08G0229900.11e-132(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.33e-27MIKC_MADS family protein