PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA08G0227000.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CO-like
Protein Properties Length: 496aa    MW: 52383.3 Da    PI: 6.4406
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA08G0227000.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.91.6e-061455237
           zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                       +++ C+ ++e  + l+C+ +   lC  C  + H        H
  ORGLA08G0227000.1 14 QQWPCDYCGEAAAALHCRADAARLCVACDRHVHAAnalsrkH 55
                       7899*******9******************999545555555 PP
2CCT63.37.3e-22444487144
                CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                        R++a++RY+eK+k+R++eK+irYesRK +A++R+RvKGrFvk++
  ORGLA08G0227000.1 444 RDNAMQRYREKKKNRRYEKHIRYESRKLRADTRKRVKGRFVKSN 487
                        899**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.1E-111360IPR000315B-box-type zinc finger
PROSITE profilePS501199.8831360IPR000315B-box-type zinc finger
CDDcd000211.57E-81660No hitNo description
PROSITE profilePS5101715.13444486IPR010402CCT domain
PfamPF062034.4E-16444486IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MKDGGGGGGR GQQQQWPCDY CGEAAAALHC RADAARLCVA CDRHVHAANA LSRKHVRAPL  60
CAACAARPAA ARVASASAPA FLCADCDTGC GGDDGAALRV PVEGFSGCPA AAELAASWGL  120
DLPGGCGGEE EEADDAFFSA LDYSMLAVDP VLRDLYVPCD PPEVVVAGGG GRRLKGEALG  180
HQLAEMARRE AETAHPHTQP HSDLSPRTPR RTSAAASGRL QEKQAPPPLP HAAATAAAAA  240
AAPEAPLPYT SLLMMAPANC TELMENDRVG DEDENVLWES TAPSVPPTQI WDFNLGKSRD  300
HNENSALEVG FGSNNGGFMI KSYNDMLKEI SSGTTKDLED IYDSRYCAAA EDIMSTNVCQ  360
LSSKNPSTGS NKRKASSCAS TIDGPTTSTS HVPAASGALG GSSNDRGSAL PKEISFCDQT  420
VVPTGADQRP CTIKIDSETL AQNRDNAMQR YREKKKNRRY EKHIRYESRK LRADTRKRVK  480
GRFVKSNGAH DVSNGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA08G0227000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649825.10.0zinc finger protein CONSTANS-LIKE 14
TrEMBLI1QLG90.0I1QLG9_ORYGL; Uncharacterized protein
STRINGORGLA08G0227000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45042026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28050.15e-17B-box type zinc finger protein with CCT domain