PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA08G0220100.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 251aa    MW: 26795.7 Da    PI: 4.3989
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA08G0220100.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.94.4e-1753105155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                        + ++GVr++ + grWv+e+r+p   g +  r +lg+f+ a+ Aa+a++aa+++l+g
  ORGLA08G0220100.1  53 PVFRGVRRRGRAGRWVCEVRVP---GrRGCRLWLGTFDAADAAARAHDAAMLALRG 105
                        579******************9...6445*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.1E-1253105IPR001471AP2/ERF domain
SuperFamilySSF541714.58E-1654115IPR016177DNA-binding domain
SMARTSM003802.4E-1654120IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-2554116IPR001471AP2/ERF domain
PROSITE profilePS5103221.16754114IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MCTTKLEEIT GEWPPPALQA ASTTSSSEPC RRLSPPSSKR PAGRTKFHET RHPVFRGVRR  60
RGRAGRWVCE VRVPGRRGCR LWLGTFDAAD AAARAHDAAM LALRGRAAAC LNFADSAWLL  120
AVPPPATLRC AADVQRAVAR ALEDFEQRES SSSVFPLAID VVAEDAMSAT SEPSAASDDD  180
AVTSSSSTTD ADEEASPFEL DVVSDMGWSL YYASLAEGLL MEPPASGASS DDDDDAIVDS  240
GDIADVSLWS Y
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA08G0220100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0041630.0AP004163.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1323_A06.
GenBankAP0046320.0AP004632.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0623F08.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648963.11e-177dehydration-responsive element-binding protein 1I
SwissprotQ0J3Y61e-178DRE1I_ORYSJ; Dehydration-responsive element-binding protein 1I
TrEMBLI1QLA01e-177I1QLA0_ORYGL; Uncharacterized protein
STRINGORGLA08G0220100.11e-178(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.11e-18C-repeat/DRE binding factor 2