PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA08G0218300.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family SRS
Protein Properties Length: 304aa    MW: 30817.9 Da    PI: 8.4242
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA08G0218300.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702221.12.2e-68892293154
             DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssa 94 
                         gt+sCqdCGnqakkdC+h RCRtCCksrgfdCathvkstWvpaakrrerq+ la+a         +++skr+r++  ++++++++ ++ss+
  ORGLA08G0218300.1  89 GGTISCQDCGNQAKKDCTHLRCRTCCKSRGFDCATHVKSTWVPAAKRRERQNLLASA---------AESSKRPRDS--AAAATSTTPTTSSG 169
                        5899***********************************************999986.........6778999997..6666777788899* PP

             DUF702  95 eskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                        e+++++  +++P+evsseavfrcvr++ vd++++e+aYqt+vsigGhvfkGiL+d G+e+
  ORGLA08G0218300.1 170 EQQQMMVGERFPREVSSEAVFRCVRLGPVDEADAEVAYQTTVSIGGHVFKGILHDVGPEH 229
                        **********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051429.4E-6091228IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016234.1E-2793135IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016242.4E-23179227IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MAGFPLGGGG GRHGRDDHHR PPVNPTDSAA AFLYPSTASR GGFQLWQQQP PPAAHPFYAQ  60
NIIRFADDPA APPSSRGGRG GGPGGSGGGG TISCQDCGNQ AKKDCTHLRC RTCCKSRGFD  120
CATHVKSTWV PAAKRRERQN LLASAAESSK RPRDSAAAAT STTPTTSSGE QQQMMVGERF  180
PREVSSEAVF RCVRLGPVDE ADAEVAYQTT VSIGGHVFKG ILHDVGPEHS SGGGGGMGGR  240
HAAAGEAGSS PSTAAAPHGG GEGGSSGVAA AAAAAAVSSS AVVMDPYPTP GPFGGAHFFH  300
GHPR
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA08G0218300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0047040.0AP004704.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0544G09.
GenBankAP0062650.0AP006265.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1112_E06.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648772.11e-149protein SHI RELATED SEQUENCE 1
TrEMBLI1QL820.0I1QL82_ORYGL; Uncharacterized protein
STRINGORGLA08G0218300.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135435124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.15e-49Lateral root primordium (LRP) protein-related