PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA08G0199700.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 439aa    MW: 46091.5 Da    PI: 7.591
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA08G0199700.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.8e-12255300555
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        h + Er+RR+++N++f  L+ +lP+       K +K +iL +A eY+ksL+
  ORGLA08G0199700.1 255 HMISERKRREKLNDSFVALKAVLPPG-----SKKDKTSILIRAREYVKSLE 300
                        8899********************95.....4999**************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.51E-16249317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.195250299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.11E-12252304No hitNo description
Gene3DG3DSA:4.10.280.101.3E-12253298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-9255300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-12256305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd146860.00149291319No hitNo description
Gene3DG3DSA:1.20.5.1704.7E-4299318No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MEDCSSWIHG YANANATAGN NGFMCGYAAS CSPVEYQQQQ QLVGSQIEHH LNQISMQMGM  60
DDESAVYDGA SMVDDLLMAS SSAHHHAGAG SFQYSSPTSS SASFRSASVS CSPESSAAAT  120
THFLGPPAPS AAAAGFHYQE VSSQAPLPLP LPPYEPQHGQ YTTVLSPPPP APELPATTTP  180
ATGGAFRRYA RHLRPRRLPK PGRCGQRMFK TAMSVLTKMH VAATYNRQYY YQQAAAAAAS  240
ASAAEAPPSG NQLQHMISER KRREKLNDSF VALKAVLPPG SKKDKTSILI RAREYVKSLE  300
SKLSELEEKN RDLEARLASR PAAAAKNDKG ETAAAPAPEA GDETKRKDLV EIEVTTSGSG  360
PGAADAAAAA GGDQETCTLN VDLRGGGGGG GMSTTDVVLR TLQCLREQIG DGASLVAMST  420
SAGSGGRPPR ANLTLQLKV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1258263ERKRRE
2259264RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA08G0199700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1029640.0AK102964.1 Oryza sativa Japonica Group cDNA clone:J033115I17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626911.10.0uncharacterized protein LOC4327325
TrEMBLI1QKP60.0I1QKP6_ORYGL; Uncharacterized protein
STRINGORGLA01G0058200.10.0(Oryza glaberrima)
STRINGORGLA08G0199700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29003182
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.11e-16bHLH family protein